Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
☆30Sep 17, 2020Updated 6 years ago
Alternatives and similar repositories for DeepTree
Users that are interested in DeepTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Track and lineage visualization with btrack and Napari☆46Sep 29, 2025Updated last year
- Cell tracking using TensorFlow and BayesianTracker☆23Jan 17, 2022Updated 4 years ago
- Explainable AI model of cell behavior☆20Apr 4, 2023Updated 3 years ago
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 6 months ago
- The 2025 version of cellPLATO☆16Jan 23, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 4 years ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated 2 years ago
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated last year
- Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data☆17Oct 7, 2026Updated 3 weeks ago
- An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.☆14Oct 16, 2026Updated 2 weeks ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆42Updated this week
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Jul 1, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 3 months ago
- ☆12Jan 10, 2021Updated 5 years ago
- A codebase accompanying the paper "Improving Performance Estimation for FPGA-based Accelerators for Convolutional Neural Networks", by Fe…☆13May 27, 2020Updated 6 years ago
- Combined Repos from DAIN and Zooming SlowMo☆21Jul 9, 2023Updated 3 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆87Updated this week
- ☆24May 1, 2025Updated last year
- Organoid Localization and Quantification Using Deep Convolutional Neural Networks☆30Jan 22, 2022Updated 4 years ago
- DataViz protocols book for wet lab scientists☆17May 26, 2026Updated 5 months ago
- Multi-Object Tracking with Integer Linear Equations☆42Jul 21, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆131Feb 14, 2024Updated 2 years ago
- Optimize image processing workflows in napari☆17May 1, 2025Updated last year
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆67Oct 27, 2024Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆22Aug 10, 2023Updated 3 years ago
- Tool for segmentation in bioimaging☆39Oct 20, 2026Updated last week
- ☆21Updated this week
- Overview of the machine learning project and various sub-tasks.☆10Updated this week
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Aug 17, 2023Updated 3 years ago
- Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)☆10Apr 15, 2022Updated 4 years ago
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Apr 4, 2025Updated last year
- Acquire: a multi-camera video streaming software focusing on microscopy☆26Oct 30, 2024Updated 2 years ago
- Cell tracking and segmentation software☆210Oct 9, 2026Updated 3 weeks ago
- Two or three subtypes of high grade serous ovarian cancer subtypes fit data from different populations better than four☆12Oct 10, 2018Updated 8 years ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆137Oct 16, 2026Updated 2 weeks ago