KristinaUlicna / DeepTreeLinks
Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
☆30Updated 5 years ago
Alternatives and similar repositories for DeepTree
Users that are interested in DeepTree are comparing it to the libraries listed below
Sorting:
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated 2 months ago
- MorphoFeatures code and data☆22Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 4 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- ☆16Updated last year
- ☆32Updated 6 months ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- ☆91Updated 3 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Updated 11 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 4 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Open source Python library for building bioimage analysis pipelines☆188Updated this week
- Utils and convenience functions for large-scale bio-image analysis.☆60Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Transformer-based cell tracking for live-cell microscopy☆123Updated last week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- StarDist plugin for napari☆38Updated last year
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Updated 3 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago