Cell tracking using TensorFlow and BayesianTracker
☆22Jan 17, 2022Updated 4 years ago
Alternatives and similar repositories for CellTracking
Users that are interested in CellTracking are comparing it to the libraries listed below
Sorting:
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- This Toolbox is build for 3D correlative microscopy. It helps with 3D to 2D correlation of three dimensional confocal image stacks to two…☆12Apr 27, 2020Updated 5 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 8 years ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- AutoPilot library☆15Nov 15, 2016Updated 9 years ago
- A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)☆16Jul 16, 2019Updated 6 years ago
- Bayesian multi-object tracking☆331Jan 9, 2026Updated last month
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Feb 2, 2026Updated 3 weeks ago
- Automated cell tracking package for MATLAB☆11Feb 21, 2019Updated 7 years ago
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- Particle tracking by solving linear assignment problem.☆62Feb 20, 2026Updated last week
- ☆20Feb 19, 2026Updated last week
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 10 months ago
- CUDA-accelerated reconstruction for 3D-structured-illumination☆12Nov 24, 2025Updated 3 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- ☆23Mar 26, 2021Updated 4 years ago
- ☆10Nov 29, 2024Updated last year
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 6 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated last year
- Collection of literature, math, etc. for Structured Illumination Microscopy☆10Apr 23, 2019Updated 6 years ago
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Aug 4, 2020Updated 5 years ago
- Cytoscape.js API support in JS, Python, and R Jupyter kernels☆10Nov 11, 2017Updated 8 years ago
- A toolbox to illustrate the use of CUDA together with Matlab.☆10Jan 5, 2017Updated 9 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- ☆26Jan 27, 2026Updated last month
- CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image☆46Jul 20, 2021Updated 4 years ago
- Label-free measurement of density and anisotropy from polarization-resolved images☆12Jun 4, 2023Updated 2 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated last week
- Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise☆13Jun 14, 2022Updated 3 years ago