haesleinhuepf / bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
☆107Updated 3 weeks ago
Alternatives and similar repositories for bia-bob:
Users that are interested in bia-bob are comparing it to the libraries listed below
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆73Updated 2 weeks ago
- Cell tracking and segmentation software☆103Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- ☆68Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- ☆38Updated 6 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated last year
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆77Updated last week
- Lectures for a napari training course☆50Updated last year
- computer vision models for single-cell phenotyping☆40Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆129Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆51Updated 3 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆63Updated 2 months ago
- Loading and handling microscopy data in blender☆109Updated 3 weeks ago
- Toolbox for the analysis of smFISH images.☆58Updated last year
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆142Updated last month
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆62Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- StarDist plugin for napari☆37Updated 5 months ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- ☆46Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- Accurate and efficient spot detection for microscopy data☆68Updated 3 weeks ago
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- A napari plugin for making animations☆84Updated 5 months ago
- ☆58Updated 2 weeks ago