A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
☆192Updated this week
Alternatives and similar repositories for Cell_ACDC
Users that are interested in Cell_ACDC are comparing it to the libraries listed below
Sorting:
- ☆16Feb 5, 2026Updated 3 weeks ago
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Jan 14, 2026Updated last month
- Cell tracking and segmentation software☆173Feb 11, 2026Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated 3 weeks ago
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆21Jan 29, 2025Updated last year
- Transformer-based cell tracking for live-cell microscopy☆124Feb 1, 2026Updated last month
- ☆12Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 11, 2026Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- ☆93Nov 5, 2025Updated 3 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆88Jan 14, 2026Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆85Nov 19, 2025Updated 3 months ago
- ☆38Dec 5, 2025Updated 2 months ago
- ☆214Feb 4, 2026Updated 3 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Nov 10, 2022Updated 3 years ago
- A python algorithm for tracking cells in 3D deforming organs☆68Nov 13, 2025Updated 3 months ago
- Segment Anything for Microscopy☆651Feb 18, 2026Updated last week
- Bayesian multi-object tracking☆331Jan 9, 2026Updated last month
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆85Feb 10, 2026Updated 2 weeks ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 10 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Feb 20, 2026Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 4 months ago
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆106Feb 11, 2026Updated 2 weeks ago
- Smooth 2D manifold extraction from 3D image stack☆22Mar 18, 2018Updated 7 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆89Updated this week
- napari widgets for start-to-finish batch processing☆15Jan 2, 2026Updated last month
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆125Feb 20, 2026Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆46Updated this week
- Reference implementation of the Graph Exchange File Format☆36Feb 4, 2026Updated 3 weeks ago
- 3D segmentation for cells and organoids of 3D multichannel images☆27Jun 24, 2025Updated 8 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Apr 9, 2020Updated 5 years ago
- Block-wise operations for large nD volumes☆45Feb 19, 2026Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Sep 29, 2024Updated last year
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- A collection of useful python utilities from True North Intelligent Algorithms☆43Feb 2, 2026Updated 3 weeks ago