A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
☆200Jul 19, 2026Updated this week
Alternatives and similar repositories for Cell_ACDC
Users that are interested in Cell_ACDC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Updated this week
- ☆17Feb 5, 2026Updated 5 months ago
- Cell tracking and segmentation software☆199Updated this week
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Jun 16, 2026Updated last month
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆31May 28, 2026Updated last month
- ☆12Feb 23, 2026Updated 4 months ago
- ☆17Jun 15, 2023Updated 3 years ago
- Transformer-based cell tracking for live-cell microscopy☆137Updated this week
- ☆105Mar 12, 2026Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated last year
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆86Feb 6, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆96May 15, 2026Updated 2 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 7 months ago
- Segment Anything for Microscopy☆701Updated this week
- MethodsJ2☆14May 6, 2022Updated 4 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆71Updated this week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆96Mar 24, 2026Updated 3 months ago
- ☆39May 29, 2026Updated last month
- membrane segmentation in 3D for cryo-ET☆93Feb 27, 2026Updated 4 months ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆122Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆86Mar 28, 2026Updated 3 months ago
- A vision language model for gigapixel whole slide images in histopathology☆100Sep 4, 2025Updated 10 months ago
- Bayesian multi-object tracking☆334Apr 1, 2026Updated 3 months ago
- Reference implementation of the Graph Exchange File Format☆41Updated this week
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆122May 22, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated last month
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆41Jun 4, 2026Updated last month
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 4 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated last year
- ☆231Feb 4, 2026Updated 5 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆93Jun 8, 2026Updated last month
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- A python algorithm for tracking cells in 3D deforming organs☆70Nov 13, 2025Updated 8 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago