SchmollerLab / Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
☆149Updated last week
Alternatives and similar repositories for Cell_ACDC:
Users that are interested in Cell_ACDC are comparing it to the libraries listed below
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆75Updated 2 weeks ago
- Cell tracking and segmentation software☆106Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆133Updated last month
- Open source Python library for building bioimage analysis pipelines☆139Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- CellProfiler tutorial pipelines and images☆93Updated this week
- Cloud-based data annotation tools for biological images☆78Updated last year
- ☆150Updated 2 weeks ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- ☆68Updated this week
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆204Updated last year
- Accurate and efficient spot detection for microscopy data☆72Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 5 months ago
- Toolbox for the analysis of smFISH images.☆59Updated last year
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- An introduction to deepcell and deep learning☆144Updated 5 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated last month
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆59Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆211Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- StarDist plugin for ImageJ☆28Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)