A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
☆194Apr 28, 2026Updated this week
Alternatives and similar repositories for Cell_ACDC
Users that are interested in Cell_ACDC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Feb 5, 2026Updated 2 months ago
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆23Jan 29, 2025Updated last year
- SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification☆14Updated this week
- Cell tracking and segmentation software☆177Apr 21, 2026Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆50Feb 2, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Apr 11, 2026Updated 2 weeks ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 4 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Apr 23, 2026Updated last week
- ☆99Mar 12, 2026Updated last month
- ☆12Feb 23, 2026Updated 2 months ago
- Transformer-based cell tracking for live-cell microscopy☆129Mar 31, 2026Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆31May 1, 2025Updated 11 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆85Feb 6, 2024Updated 2 years ago
- Segment Anything for Microscopy☆680Apr 23, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 4 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆94Jan 14, 2026Updated 3 months ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- ☆38Mar 9, 2026Updated last month
- membrane segmentation in 3D for cryo-ET☆90Feb 27, 2026Updated 2 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆86Mar 28, 2026Updated last month
- Bayesian multi-object tracking☆331Apr 1, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last month
- Reference implementation of the Graph Exchange File Format☆39Apr 21, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆25Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- ☆219Feb 4, 2026Updated 2 months ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆119Mar 9, 2026Updated last month
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆92Mar 24, 2026Updated last month
- A vision language model for gigapixel whole slide images in histopathology☆96Sep 4, 2025Updated 7 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90Apr 14, 2026Updated 2 weeks ago
- A python algorithm for tracking cells in 3D deforming organs☆69Nov 13, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Python toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆111Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Block-wise operations for large nD volumes☆46Apr 23, 2026Updated last week
- 3D segmentation for cells and organoids of 3D multichannel images☆32Jun 24, 2025Updated 10 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆46Apr 21, 2026Updated last week
- ☆52May 1, 2025Updated 11 months ago