cytomining / copairs
Find profile pairs and compute metrics between them.
☆11Updated last month
Alternatives and similar repositories for copairs:
Users that are interested in copairs are comparing it to the libraries listed below
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 5 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Updated 8 months ago
- ☆32Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- QuPath extension for Cellsparse☆18Updated 4 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆31Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- Piecewise alignment for layers of mosaics☆23Updated last week
- StarDist plugin for napari☆38Updated 7 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- GIve easy, high-level access to ome-zarr fileset☆14Updated 2 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 7 months ago
- ☆22Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- A fully scalable robust image feature extraction library.☆24Updated 2 weeks ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆20Updated 3 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- Raw format to OME-TIFF converter☆50Updated last month
- MethodsJ2☆14Updated 2 years ago