cytomining / copairsLinks
Find profile pairs and compute retrieval metrics between them.
☆21Updated last week
Alternatives and similar repositories for copairs
Users that are interested in copairs are comparing it to the libraries listed below
Sorting:
- Interactive visualization of spatial omics data☆75Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- Multiple-choice microscopy pipeline☆145Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆105Updated last week
- ☆37Updated 2 years ago
- collection of mass spectrometry imaging workflows☆22Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 4 months ago
- Framework for image and flow cytometry analysis☆32Updated last month
- Predicting Cell Health with Morphological Profiles☆39Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆102Updated last month
- Python package for processing image-based profiling data☆134Updated last week
- Toolbox for the analysis of smFISH images.☆73Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆108Updated last month
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- CellProfiler tutorial pipelines and images☆99Updated this week
- A pipeline to transform images into valuable analysis items☆18Updated 7 months ago
- Python API and Jupyter widget for Vitessce☆61Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Development of PICASSO plugin for napari☆16Updated 3 years ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆39Updated last week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆26Updated this week
- ☆18Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆30Updated 8 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated 7 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- Compendium of tools for the Imaging Platform☆15Updated last week