cytomining / copairsLinks
Find profile pairs and compute metrics between them.
☆17Updated 3 weeks ago
Alternatives and similar repositories for copairs
Users that are interested in copairs are comparing it to the libraries listed below
Sorting:
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- ☆33Updated last year
- A plugin to visualise 3D spatial single cell omics☆22Updated last week
- The official QuPath extension for InstanSeg☆19Updated last week
- The 2023 version of cellPLATO☆15Updated 7 months ago
- A pipeline to transform images into valuable analysis items☆13Updated last week
- Piecewise alignment for layers of mosaics☆25Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 5 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated 2 weeks ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 3 weeks ago
- Spatial Single-Cell Analysis Toolkit☆92Updated last month
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated this week
- QuPath extension for Cellsparse☆18Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- Framework for image and flow cytometry analysis☆26Updated last month
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 9 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- Python API and Jupyter widget for Vitessce☆47Updated this week
- ☆62Updated last week
- Development of PICASSO plugin for napari☆17Updated 2 years ago