usnistgov / Lineage-Mapper
Lineage Mapper Fiji plugin and MATLAB source code
☆18Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for Lineage-Mapper
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated last month
- ☆25Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 weeks ago
- Track cells and build cell lineages☆28Updated 3 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- Deep convolutional neural networks for biological motion analysis☆14Updated 5 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Updated 6 years ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- The U-Net Segmentation plugin for Fiji (ImageJ)☆87Updated 2 years ago
- A python algorithm for tracking cells in 3D time lapse images.☆52Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆51Updated last year
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Python nd2 reader based on the ND2 SDK☆16Updated 2 years ago
- Learn morphological states of dynamic cells☆12Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated this week
- Notebooks for VoidSeg☆16Updated 4 years ago
- Resources for teaching/preparing to teach bioimage analysis☆48Updated last week
- U-net based segmentation of nuclei in microscopy images☆51Updated 6 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 3 months ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆33Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- Easily read and write ome-tiff images in python☆26Updated 6 months ago
- ☆17Updated last year
- ☆28Updated 3 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆58Updated 4 years ago