usnistgov / Lineage-MapperLinks
Lineage Mapper Fiji plugin and MATLAB source code
☆18Updated 3 years ago
Alternatives and similar repositories for Lineage-Mapper
Users that are interested in Lineage-Mapper are comparing it to the libraries listed below
Sorting:
- Quantitative analysis of cell motility behaviors☆13Updated 8 months ago
- ☆25Updated 5 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- U-net based segmentation of nuclei in microscopy images☆52Updated 7 years ago
- Deep convolutional neural networks for biological motion analysis☆14Updated 6 years ago
- ☆18Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 weeks ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated last month
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- Track and lineage visualization with btrack and Napari☆46Updated last month
- ☆32Updated 2 months ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- Cookiecutter for napari plugins☆72Updated 11 months ago
- Cell tracker designed for tracking intestinal organoids☆28Updated last week
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- Smooth 2D manifold extraction from 3D image stack☆21Updated 7 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Tool for segmentation in bioimaging☆35Updated last week