Lineage Mapper Fiji plugin and MATLAB source code
☆19Aug 4, 2022Updated 3 years ago
Alternatives and similar repositories for Lineage-Mapper
Users that are interested in Lineage-Mapper are comparing it to the libraries listed below
Sorting:
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 2 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆204Sep 15, 2020Updated 5 years ago
- ☆10Feb 5, 2026Updated last month
- Time Series Analysis and Its Applications, Ed 5☆20Mar 14, 2026Updated last week
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated last year
- Python nd2 reader based on the ND2 SDK☆17Jan 28, 2022Updated 4 years ago
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 8 years ago
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆18Jun 9, 2022Updated 3 years ago
- Mutational antigenic profiling of SARS-CoV-2 RBD against human convalescent sera from the HAARVI cohort☆10Mar 3, 2021Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- Create High-dynamic-range image☆10Jan 8, 2018Updated 8 years ago
- U-net based segmentation of nuclei in microscopy images☆55Sep 13, 2018Updated 7 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- ☆12Jun 29, 2021Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- Automated identification of cell boundaries from the pathological video data☆24Aug 4, 2018Updated 7 years ago
- Simulates vertex model with an additional motility force☆10Mar 21, 2017Updated 9 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆11Jun 12, 2024Updated last year
- Communicate with Vision Research Phantom® cameras with python☆10Jun 23, 2023Updated 2 years ago
- Python and ImageJ scripts designed to track single cells and analyze fluorescence☆15Dec 16, 2021Updated 4 years ago
- Track cells and build cell lineages☆35Aug 6, 2024Updated last year
- An interactive web application tool that enables big data visualization of the 136k+ UK Road Accidents reported during 2016.☆10Oct 19, 2022Updated 3 years ago
- elliptical fourier descriptors with and without lobe contributions☆13Sep 15, 2020Updated 5 years ago
- (Old) Fast Iterative Digital Image Correlation Algorithm☆12Apr 27, 2018Updated 7 years ago
- Temporal Pathway Synthesizer☆17Jun 28, 2024Updated last year
- Bayesian multi-object tracking☆331Jan 9, 2026Updated 2 months ago
- Run TFLITE models on the web☆12Jan 2, 2022Updated 4 years ago
- A library of MATLAB functions for visualization, processing, and analysis of output from Bayesian models fit with Stan.☆10Dec 17, 2021Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- A manually curated lists of software, publications and other resources related to the analysis of HDX-MS data.☆11Dec 15, 2025Updated 3 months ago
- ☆11Mar 2, 2021Updated 5 years ago
- Python tools for ImageJ☆13Jul 25, 2021Updated 4 years ago
- neural network for obtaining binarized mask for objects in grayscale images☆14Sep 11, 2020Updated 5 years ago
- ☆19Mar 13, 2026Updated last week
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 3 years ago
- Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data☆16Aug 7, 2024Updated last year
- Examples of Dielectric Breakdown simulation to generate Lichtenberg Figure(i.e. a lightning, thunder)☆17Aug 25, 2020Updated 5 years ago