Lineage Mapper Fiji plugin and MATLAB source code
☆19Aug 4, 2022Updated 4 years ago
Alternatives and similar repositories for Lineage-Mapper
Users that are interested in Lineage-Mapper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- Python scripts for tracking cells in fluorescent microscopy.☆11Dec 10, 2017Updated 8 years ago
- A repository for data package representation for cell tracking data☆13Apr 30, 2020Updated 6 years ago
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Deep convolutional neural networks for biological motion analysis☆15Jan 26, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆207Sep 15, 2020Updated 6 years ago
- Single Cell Segmentation☆15May 15, 2020Updated 6 years ago
- ☆10Feb 5, 2026Updated 8 months ago
- ☆16Dec 13, 2018Updated 7 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 6 years ago
- Python nd2 reader based on the ND2 SDK☆17Jan 28, 2022Updated 4 years ago
- ☆12Jul 27, 2023Updated 3 years ago
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Apr 7, 2024Updated 2 years ago
- J-Net: Multiresolution Neural Network for Semantic Segmentation☆10Jul 22, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- (Biological) Cell Tracker for Microscopy Image Analysis☆15May 10, 2017Updated 9 years ago
- Interactive applications of stlearn☆17May 1, 2023Updated 3 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 6 years ago
- 3D Vertex Model☆10May 16, 2026Updated 5 months ago
- ☆12Jun 29, 2021Updated 5 years ago
- Cell tracking using TensorFlow and BayesianTracker☆23Jan 17, 2022Updated 4 years ago
- Real-time audiovisual scripting using LuaJIT☆13Feb 8, 2014Updated 12 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- A Python package to conduct 3D Traction Force Microscopy on multicellular aggregates (spheroids).☆10Aug 27, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- U-net based segmentation of nuclei in microscopy images☆57Sep 13, 2018Updated 8 years ago
- Python and ImageJ scripts designed to track single cells and analyze fluorescence☆15Dec 16, 2021Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆74Sep 29, 2024Updated 2 years ago
- ARA.v1.6.0☆10Jun 9, 2024Updated 2 years ago
- Track cells and build cell lineages☆35Jun 4, 2026Updated 4 months ago
- Automated identification of cell boundaries from the pathological video data☆24Aug 4, 2018Updated 8 years ago
- Run TFLITE models on the web☆13Jan 2, 2022Updated 4 years ago
- ☆16Updated this week
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Utilities for importing FEM meshes to Mathematica☆16Apr 20, 2021Updated 5 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆13Oct 23, 2026Updated last week
- ☆13Aug 14, 2026Updated 2 months ago
- Bayesian multi-object tracking☆335Apr 1, 2026Updated 6 months ago
- elliptical fourier descriptors with and without lobe contributions☆13Sep 15, 2020Updated 6 years ago
- A computational tool for processing and differentiating PCR duplicates from biological duplicates☆10Sep 20, 2018Updated 8 years ago
- vertex model implementation to simulate biological tissue in 3D☆12Oct 17, 2021Updated 5 years ago