weigertlab / tarrowLinks
Time arrow prediction for live-cell microscopy
☆18Updated last year
Alternatives and similar repositories for tarrow
Users that are interested in tarrow are comparing it to the libraries listed below
Sorting:
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 7 months ago
- ☆23Updated last month
- Transformer-based cell tracking for live-cell microscopy☆73Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated last month
- Napari plugin for vollseg☆14Updated last year
- Guides and code for 3D nuclear instance segmentation☆22Updated this week
- StarDist plugin for napari☆38Updated 10 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Multi-Object Tracker using Integer Linear Equations☆32Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆15Updated 2 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- ☆14Updated this week
- dask empowered fast4dreg☆11Updated 7 months ago
- ☆16Updated 10 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- ☆50Updated last month
- ☆16Updated 4 months ago
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 7 months ago
- Cell tracking and segmentation software☆117Updated this week
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆88Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 4 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆18Updated last week