weigertlab / tarrowLinks
Time arrow prediction for live-cell microscopy
☆19Updated last year
Alternatives and similar repositories for tarrow
Users that are interested in tarrow are comparing it to the libraries listed below
Sorting:
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 8 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Transformer-based cell tracking for live-cell microscopy☆81Updated last week
- Cell tracking and segmentation software☆127Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- ☆23Updated last month
- Multi-Object Tracker using Integer Linear Equations☆37Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- StarDist plugin for napari☆40Updated 11 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆16Updated 3 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆95Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆21Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- Browse your OMERO database from within napari.☆38Updated this week
- ☆51Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 3 months ago
- A stable diffusion demo for napari☆11Updated last year
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- 3D shape analysis using deep learning☆25Updated last year
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- dask empowered fast4dreg☆11Updated 8 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 10 months ago