CamaraLab / CAJALLinks
A Python package using Gromov-Wasserstein distance to compare cell shapes
☆20Updated last week
Alternatives and similar repositories for CAJAL
Users that are interested in CAJAL are comparing it to the libraries listed below
Sorting:
- ☆20Updated 5 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- 3D segmentation for cells and organoids of 3D multichannel images☆24Updated 4 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated last week
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Analysis of data produced by cvapipe for the variance paper☆23Updated 10 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 6 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 5 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆93Updated last month
- ☆32Updated 2 months ago
- ☆74Updated this week
- Minimum Information about Tissue Imaging☆20Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆98Updated 7 months ago
- A Python package for single-cell spatial image analysis.☆18Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆37Updated 2 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆69Updated 2 years ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆22Updated 2 weeks ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Updated 4 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Interactive visualization of spatial omics data☆70Updated last week
- ☆34Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago