Alternatives and similar repositories for CAJAL

Users that are interested in CAJAL are comparing it to the libraries listed below

• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 years ago
• AllenCell / aics-shparam
  ☆20Updated 3 months ago
• snap-stanford / stellar
  ☆67Updated 2 years ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated last month
• rockdeme / chrysalis
  Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
  ☆17Updated last month
• scverse / spatialdata-io
  ☆66Updated this week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 6 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated last month
• quantacell / 3DcellScope
  3D segmentation for cells and organoids of 3D multichannel images
  ☆18Updated last month
• giovp / spatialdata-sandbox
  ☆12Updated this week
• RiosGroup / STAPL3D
  SegmenTation Analysis by ParaLlelization of 3D Datasets
  ☆11Updated last year
• ekvall93 / ELD
  ☆31Updated 7 months ago
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆62Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆58Updated 2 months ago
• KerenLab / CellSighter
  ☆34Updated last year
• ZhuangLab / MERlin
  MERFISH decoding software
  ☆26Updated 2 years ago
• ElementoLab / utag
  ☆38Updated last year
• AltschulerWu-Lab / MUSE
  MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…
  ☆34Updated 3 years ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 3 months ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated last month
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆93Updated 4 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 8 months ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated last year
• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆29Updated 2 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 10 months ago
• HiDiHlabs / ssam
  ☆27Updated 9 months ago
• cytomining / copairs
  Find profile pairs and compute metrics between them.
  ☆17Updated last month