A Python package using Gromov-Wasserstein distance to compare cell shapes
☆25Jun 15, 2026Updated last month
Alternatives and similar repositories for CAJAL
Users that are interested in CAJAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed tissue imaging☆11May 18, 2022Updated 4 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Implementation of Mapper Algorithm☆14Dec 19, 2016Updated 9 years ago
- An R package for feature selection in topological spaces.☆11Aug 12, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated 4 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆42Jul 10, 2026Updated last week
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers☆52Feb 15, 2022Updated 4 years ago
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆21May 16, 2026Updated 2 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆33Jul 8, 2026Updated last week
- ☆23May 1, 2025Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 4 months ago
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated 3 weeks ago
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Aug 4, 2020Updated 5 years ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Jun 22, 2026Updated 3 weeks ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆253Jul 12, 2026Updated last week
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 3 months ago
- Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.☆65Jun 11, 2026Updated last month
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆36Jan 3, 2025Updated last year
- Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset☆15May 6, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated last month
- A modular, containerized pipeline for PRO-seq data processing☆12Mar 6, 2026Updated 4 months ago
- This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.☆37Jul 10, 2026Updated last week
- The official re-implementation of the Neurips 2021 paper, "Targeted Neural Dynamical Modeling".☆11Mar 4, 2022Updated 4 years ago
- An Interactive Introduction to Model-Agnostic Meta-Learning☆10Sep 18, 2022Updated 3 years ago
- A Collection of optimized implementations of algorithms for the Feedback Arc Set problem☆12Feb 27, 2025Updated last year
- A suite of regression-based tools for ribosome profiling data analysis☆10Oct 3, 2022Updated 3 years ago