A Python package using Gromov-Wasserstein distance to compare cell shapes
☆25Jun 15, 2026Updated last month
Alternatives and similar repositories for CAJAL
Users that are interested in CAJAL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed tissue imaging☆11May 18, 2022Updated 4 years ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆16Apr 21, 2026Updated 3 months ago
- Tools to work with the FlyWire connectome. Fully interoperable with navis.☆24Jul 9, 2026Updated last month
- Codebase for training the SubCell models☆24Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Universal Renderer for Neuroscience☆16Nov 4, 2025Updated 9 months ago
- NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions☆27Feb 24, 2026Updated 5 months ago
- PyTorch Implementation of Global Neuron Shape Reasoning with Point Affinity Transformers☆14Mar 16, 2026Updated 4 months ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Implementation of Mapper Algorithm☆14Dec 19, 2016Updated 9 years ago
- Reconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight i…☆36Jan 3, 2025Updated last year
- An R package for feature selection in topological spaces.☆11Aug 12, 2021Updated 4 years ago
- Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data☆26Jul 14, 2026Updated 3 weeks ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Jun 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- 3D dense segmentation compression codec based on crack codes.☆17Aug 1, 2026Updated last week
- A fast, lightweight 3D viewer for Python based on WGPU☆61Updated this week
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆43Jul 10, 2026Updated last month
- Block-wise task scheduling for large nD volumes.☆32Updated this week
- MorphVAE: Generating Neural Morphologies from 3D-Walks☆15Sep 4, 2022Updated 3 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.☆19Jul 30, 2026Updated last week
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Connectome Reconstruction and Exploration Simple Tool☆21Jan 29, 2024Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers☆52Feb 15, 2022Updated 4 years ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 11 months ago
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆21May 16, 2026Updated 2 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago
- ☆18May 15, 2026Updated 2 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.☆24Jan 8, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 7 months ago
- ☆23May 1, 2025Updated last year
- Bayesian Segmentation of Spatial Transcriptomics Data☆209Jul 31, 2026Updated last week
- Serialize dict of integers to bytes and read with near zero parsing. Specialization for int to int.☆10Jun 26, 2026Updated last month
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago