CamaraLab / CAJALLinks
A Python package using Gromov-Wasserstein distance to compare cell shapes
☆17Updated 3 months ago
Alternatives and similar repositories for CAJAL
Users that are interested in CAJAL are comparing it to the libraries listed below
Sorting:
- ☆20Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 10 months ago
- ☆33Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆65Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- ☆12Updated last month
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 10 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Piecewise alignment for layers of mosaics☆24Updated last week
- ☆14Updated 3 years ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- ☆31Updated 5 months ago
- MERFISH decoding software☆26Updated last year
- RAnking Markers for CEll Segmentation☆11Updated 3 years ago
- ☆62Updated this week
- ☆28Updated 7 months ago
- ☆27Updated 8 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- ☆35Updated last year
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆17Updated 6 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated last week
- QuPath extension to interactively align images☆23Updated last week
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- Python API and Jupyter widget for Vitessce☆46Updated 3 weeks ago
- Interactive visualization of spatial omics data☆58Updated this week