This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 2018 competition
☆55Sep 14, 2020Updated 5 years ago
Alternatives and similar repositories for biomagdsb
Users that are interested in biomagdsb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantitative analysis of cell motility behaviors☆13Feb 21, 2025Updated last year
- Community-contributed and experimental CellProfiler modules.☆75May 22, 2026Updated 3 weeks ago
- Lineage Mapper Fiji plugin and MATLAB source code☆19Aug 4, 2022Updated 3 years ago
- U-net based segmentation of nuclei in microscopy images☆55Sep 13, 2018Updated 7 years ago
- ☆24Aug 27, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Three-dimensional propagation and time-reversal of fluorescence images☆40Mar 25, 2019Updated 7 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- Deep convolutional neural networks for biological motion analysis☆14Jan 26, 2019Updated 7 years ago
- ImageJ plugin suite for image feature extraction☆10Dec 17, 2015Updated 10 years ago
- ☆10Nov 5, 2020Updated 5 years ago
- Analysis of results of the Data Science Bowl 2018☆22Jun 16, 2020Updated 6 years ago
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated 2 years ago
- Denoising via adaptive binning.☆14Jan 6, 2026Updated 5 months ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆33May 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using…☆54Jan 27, 2020Updated 6 years ago
- A pipeline to transform images into valuable analysis items☆19Jun 8, 2026Updated last week
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Jul 12, 2025Updated 11 months ago
- A general illumination correction method for optical microscopy.☆44Aug 2, 2021Updated 4 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 3 months ago
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 3 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Feb 7, 2020Updated 6 years ago
- ☆16Dec 13, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆24Jun 1, 2026Updated 2 weeks ago
- Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python☆31Jul 13, 2021Updated 4 years ago
- ☆51Jun 26, 2018Updated 7 years ago
- AICS Segmentation (One-Way) Mirror☆45Dec 16, 2020Updated 5 years ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆14Oct 15, 2025Updated 8 months ago
- A web application for classifying objects☆29Nov 23, 2021Updated 4 years ago
- A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images☆93Mar 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 8 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆23Updated this week
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- Re-stained whole slide image alignment☆36Oct 16, 2023Updated 2 years ago