Annotate microscopy images for CNN classifier
☆11May 31, 2022Updated 3 years ago
Alternatives and similar repositories for cnn-annotator
Users that are interested in cnn-annotator are comparing it to the libraries listed below
Sorting:
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- Fast global mutual information-based rigid alignment in the Fourier domain☆32Aug 3, 2024Updated last year
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Singularity image for cryo-CARE☆37Jan 7, 2022Updated 4 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- napari plugin for trackastra☆17Nov 12, 2025Updated 3 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- a tool for using surfaces to explore volumetric data in napari☆19Updated this week
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 2 months ago
- A napari plugin for making animations☆95Feb 1, 2026Updated last month
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- ☆21Mar 13, 2024Updated last year
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- ☆24Sep 13, 2025Updated 5 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆62Dec 16, 2025Updated 2 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Sep 26, 2024Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Dec 11, 2025Updated 2 months ago
- A python algorithm for tracking cells in 3D deforming organs☆68Nov 13, 2025Updated 3 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Feb 2, 2026Updated last month
- Material for the DataLucence:Images course☆10Jun 14, 2017Updated 8 years ago
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- Illustrations created by Henning Falk for the Zarr community☆44Jan 29, 2025Updated last year
- Python package to generate random human-readable strings, e.g. project and experiment names☆11May 5, 2025Updated 9 months ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 3 years ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Feb 20, 2026Updated last week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago