lowe-lab-ucl / cnn-annotator
Annotate microscopy images for CNN classifier
☆12Updated 2 years ago
Alternatives and similar repositories for cnn-annotator
Users that are interested in cnn-annotator are comparing it to the libraries listed below
Sorting:
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆14Updated 3 weeks ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 2 weeks ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆32Updated last month
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 7 months ago
- napari plugin for trackastra☆13Updated 6 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- dask empowered fast4dreg☆11Updated 5 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 2 weeks ago
- ☆10Updated last month
- Course on Deep Learning for imaging using PyTorch☆13Updated 3 years ago
- A napari plugin to view and edit metadata☆10Updated last year
- NGIO is a Python library to streamline OME-Zarr image analysis workflows.☆14Updated this week
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Updated last year
- A napari plugin to analysis point spread functions.☆12Updated last month
- ☆15Updated last year
- ☆13Updated 5 years ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated 11 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- ☆15Updated 2 years ago
- Repository for teaching and instruction purposes☆9Updated 2 years ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Use Napari Viewer to display CZI images☆11Updated 2 years ago
- Multi-Object Tracker using Integer Linear Equations☆30Updated last month
- my first baby steps with Napari☆10Updated 5 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆16Updated last month