The 2025 version of cellPLATO
☆15Jan 23, 2026Updated last month
Alternatives and similar repositories for cellPLATO
Users that are interested in cellPLATO are comparing it to the libraries listed below
Sorting:
- Base implementation of the Multi-Encoder Variational AutoEncoder (ME-VAE)☆10Feb 28, 2022Updated 4 years ago
- napari widgets for start-to-finish batch processing☆15Mar 1, 2026Updated last week
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Variational autoencoder (VAE) for image analysis, built in keras☆11Jul 21, 2022Updated 3 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Updated this week
- A collection of useful python utilities from True North Intelligent Algorithms☆43Feb 2, 2026Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated last month
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- ☆22Aug 17, 2023Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Native Qt interface for Meta's Segment Anything 2 in Images and Videos☆31Sep 26, 2024Updated last year
- ☆10Jul 10, 2024Updated last year
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- navigate - open source light-sheet microscope controls☆38Updated this week
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Updated this week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated last month
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆85Nov 19, 2025Updated 3 months ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 4 years ago
- Move Layers.jsx - Alternative to moving layers by dragging in the Layers panel.☆12Feb 4, 2020Updated 6 years ago
- Example of ExpressJS based GraphQL app with authentication and access control system.☆11Dec 12, 2022Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- ImageJ macro for microglia morphology analysis☆17Jan 13, 2026Updated last month
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Mar 14, 2025Updated 11 months ago
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated 10 months ago
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated 3 weeks ago
- A downloadable pdf containing summary of frequently used pandas operations.☆10Sep 26, 2020Updated 5 years ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆10Jul 25, 2022Updated 3 years ago
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- A fast, adaptive approach to estimating contrast sensitivity function parameters☆15Mar 27, 2023Updated 2 years ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Sep 28, 2023Updated 2 years ago
- Manual Eyetracking Coding with R and Shiny☆11Jan 23, 2020Updated 6 years ago
- ☆15Mar 13, 2024Updated last year