Michael-shannon / cellPLATOLinks
The 2023 version of cellPLATO
☆15Updated last week
Alternatives and similar repositories for cellPLATO
Users that are interested in cellPLATO are comparing it to the libraries listed below
Sorting:
- Interactive visualization of spatial omics data☆64Updated this week
- Toolbox for the analysis of smFISH images.☆68Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated 6 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- ☆34Updated last year
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆13Updated last month
- ☆85Updated 4 months ago
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- ☆11Updated 2 weeks ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆11Updated last week
- Deconvolution of widefield microscopy images and generation of point spread functions☆48Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆144Updated 5 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- A relabeling tool for tiled segmentation with Dask☆16Updated 10 months ago
- Multiple-choice microscopy pipeline☆136Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- Spatial Single-Cell Analysis Toolkit☆94Updated last month
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 9 months ago
- comseg☆24Updated 6 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆45Updated last month
- A platform for compiling, analyzing, and exploring tracking data☆46Updated 4 months ago