PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
☆28Jun 5, 2024Updated last year
Alternatives and similar repositories for PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
Users that are interested in PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis are comparing it to the libraries listed below
Sorting:
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 2 months ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- A template repo used to make new napari plugins☆32Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 9 months ago
- dask empowered fast4dreg☆15Feb 20, 2026Updated last week
- ☆51May 1, 2025Updated 10 months ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at th…☆16Jun 27, 2025Updated 8 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 4 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆19Mar 11, 2025Updated 11 months ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Feb 11, 2026Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Cell tracking and segmentation software☆173Feb 11, 2026Updated 2 weeks ago
- ☆38Dec 5, 2025Updated 2 months ago
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Process images using SimpleITK in napari☆23May 1, 2025Updated 10 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆125Feb 20, 2026Updated last week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Jul 9, 2024Updated last year
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Feb 20, 2026Updated last week
- Segment images utilizing pre-trained neural networks as feature extractors☆47Updated this week
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 3 months ago
- Accurate and efficient spot detection for microscopy data☆117Feb 5, 2026Updated 3 weeks ago
- A napari plugin to view and edit metadata☆13Updated this week
- A tutorial of classical shape analysis methods☆11Nov 25, 2023Updated 2 years ago
- ☆12May 6, 2024Updated last year
- ☆12Feb 5, 2026Updated 3 weeks ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 5 months ago
- ☆13Jan 22, 2026Updated last month
- ☆12Feb 23, 2026Updated last week
- Easy Volumetric Segmentation with Deep Learning☆28Jan 25, 2026Updated last month
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- A platform for compiling, analyzing, and exploring tracking data☆48Feb 2, 2026Updated last month
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆153Jan 11, 2026Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Dec 22, 2025Updated 2 months ago
- ☆214Feb 4, 2026Updated 3 weeks ago