Bayesian multi-object tracking
☆331Jan 9, 2026Updated 2 months ago
Alternatives and similar repositories for btrack
Users that are interested in btrack are comparing it to the libraries listed below
Sorting:
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Jan 17, 2022Updated 4 years ago
- Particle tracking by solving linear assignment problem.☆63Mar 6, 2026Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆37Jul 8, 2025Updated 8 months ago
- Cell tracking and segmentation software☆174Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- A napari plugin for clustering objects according to their properties.☆90Updated this week
- Transformer-based cell tracking for live-cell microscopy☆125Feb 1, 2026Updated last month
- Linking napari layers with Matplotlib plots☆43Mar 1, 2026Updated 3 weeks ago
- Explainable AI model of cell behavior☆20Apr 4, 2023Updated 2 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆61Jul 18, 2025Updated 8 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆193Updated this week
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆242Feb 21, 2025Updated last year
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 5 months ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆75Mar 2, 2026Updated 2 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆80Dec 16, 2024Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- a generalist algorithm for cellular segmentation with human-in-the-loop capabilities☆2,114Updated this week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 11 months ago
- ☆52May 1, 2025Updated 10 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- StarDist - Object Detection with Star-convex Shapes☆1,188Feb 14, 2026Updated last month
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45May 1, 2025Updated 10 months ago
- A napari plugin for making animations☆95Feb 1, 2026Updated last month
- StarDist plugin for napari☆39Aug 24, 2024Updated last year
- GPU-accelerated general purpose image processing and image analysis in napari☆36May 1, 2025Updated 10 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11May 3, 2023Updated 2 years ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆204Sep 15, 2020Updated 5 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 3 months ago
- ilastik plugin for napari☆14Mar 2, 2026Updated 2 weeks ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated 10 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆117Mar 13, 2026Updated last week