quantumjot / btrackLinks
Bayesian multi-object tracking
☆330Updated 3 weeks ago
Alternatives and similar repositories for btrack
Users that are interested in btrack are comparing it to the libraries listed below
Sorting:
- Track cells and build cell lineages☆35Updated last year
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆91Updated last year
- Cell tracker designed for tracking intestinal organoids☆31Updated last week
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆43Updated last year
- The U-Net Segmentation plugin for Fiji (ImageJ)☆89Updated 3 years ago
- A python algorithm for tracking cells in 3D deforming organs☆65Updated 3 weeks ago
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆221Updated last month
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆126Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 2 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆129Updated last week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆203Updated 5 years ago
- Particle tracking by solving linear assignment problem.☆60Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆186Updated this week
- Python module to analyse skeleton (thin object) images☆138Updated 2 months ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆36Updated last week
- ilastik-shell, applets, and workflows to string them together.☆385Updated last week
- official implementation of the PatchPerPix instance segmentation method☆34Updated 2 years ago
- TrackMate is your buddy for your everyday tracking.☆222Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆235Updated 9 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.☆51Updated 3 years ago
- Transformer-based cell tracking for live-cell microscopy☆112Updated 3 weeks ago
- Open source Python library for building bioimage analysis pipelines☆187Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- The python-microscopy environment - an open-source package for light microscopy☆92Updated 2 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- The ImageJ plugin to run deep-learning models☆98Updated last month
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago