quantumjot / btrackLinks
Bayesian multi-object tracking
☆329Updated last month
Alternatives and similar repositories for btrack
Users that are interested in btrack are comparing it to the libraries listed below
Sorting:
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆91Updated last year
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆41Updated last year
- Track cells and build cell lineages☆35Updated last year
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated last month
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆36Updated 2 weeks ago
- Cell tracker designed for tracking intestinal organoids☆28Updated last week
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- TrackMate is your buddy for your everyday tracking.☆215Updated 2 weeks ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆199Updated 5 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Particle tracking by solving linear assignment problem.☆58Updated 2 weeks ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆19Updated 4 months ago
- ilastik-shell, applets, and workflows to string them together.☆384Updated last week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆120Updated this week
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆214Updated last week
- Cell tracking and segmentation software☆150Updated 3 weeks ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆121Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆122Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆69Updated 3 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated this week
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated 4 months ago
- Animal Part Tracker☆85Updated last week
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆169Updated 5 months ago
- Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.☆50Updated 3 years ago
- Leica Image Format (LIF) file reader for Python☆36Updated 3 months ago
- Transformer-based cell tracking for live-cell microscopy☆104Updated 2 weeks ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆232Updated 8 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Open source Python library for building bioimage analysis pipelines☆185Updated this week