Alternatives and similar repositories for btrack

Users that are interested in btrack are comparing it to the libraries listed below

• vanvalenlab / deepcell-tracking
  Track cells and build cell lineages
  ☆35Updated 11 months ago
• klasma / BaxterAlgorithms
  Software for segmentation, tracking and analysis of cells in microscope image sequences.
  ☆40Updated last year
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆114Updated last week
• jvzonlab / OrganoidTracker
  Cell tracker designed for tracking intestinal organoids
  ☆26Updated last week
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆60Updated 3 months ago
• oist / Usiigaci
  Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning
  ☆195Updated 4 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆179Updated this week
• glichtner / pystackreg
  A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
  ☆89Updated 8 months ago
• live-image-tracking-tools / traccuracy
  Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
  ☆34Updated last week
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆115Updated last week
• clEsperanto / pyclesperanto_prototype
  GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data
  ☆229Updated 4 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 8 months ago
• DeepTrackAI / DeepTrack2
  DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…
  ☆208Updated this week
• weigertlab / trackastra
  Transformer-based cell tracking for live-cell microscopy
  ☆76Updated last month
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆88Updated 2 years ago
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆377Updated last week
• trackmate-sc / TrackMate
  TrackMate is your buddy for your everyday tracking.
  ☆199Updated this week
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆165Updated 2 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆116Updated last year
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆97Updated 2 weeks ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆134Updated 5 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆178Updated last week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 5 months ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆77Updated 7 months ago
• soft-matter / trackpy
  Python particle tracking toolkit
  ☆469Updated last week
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆53Updated last month
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆128Updated last month
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆65Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week