quantumjot / btrack
Bayesian multi-object tracking
☆320Updated this week
Alternatives and similar repositories for btrack:
Users that are interested in btrack are comparing it to the libraries listed below
- Software for segmentation, tracking and analysis of cells in microscope image sequences.☆39Updated last year
- Circulation Network based Data-association for Multi-object Tracking☆32Updated 2 years ago
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆87Updated 6 months ago
- ilastik-shell, applets, and workflows to string them together.☆368Updated 3 weeks ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆156Updated this week
- TrackMate is your buddy for your everyday tracking.☆188Updated 2 weeks ago
- ☆69Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- Open source Python library for building bioimage analysis pipelines☆147Updated this week
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆112Updated last week
- Cell tracking and segmentation software☆110Updated this week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆74Updated 4 months ago
- Track cells and build cell lineages☆33Updated 8 months ago
- A python algorithm for tracking cells in 3D time lapse images.☆57Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆50Updated 2 weeks ago
- ☆71Updated last month
- DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experime…☆199Updated 2 weeks ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 5 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆213Updated 3 months ago
- ☆12Updated 2 months ago
- Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth☆30Updated this week
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆224Updated 2 months ago
- Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning☆195Updated 4 years ago
- Cell tracker designed for tracking intestinal organoids☆21Updated last week
- The python-microscopy environment - an open-source package for light microscopy☆88Updated last week
- Deep Learning Library for Single Cell Analysis☆446Updated 7 months ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- Use ImageJ functionality from napari☆31Updated 3 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated 2 weeks ago
- Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the …☆27Updated last week