Alternatives and similar repositories for microDL:

Users that are interested in microDL are comparing it to the libraries listed below

• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 3 years ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆55Updated last month
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• kukionfr / VAMPIRE_open
  open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
  ☆27Updated 2 years ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 3 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last week
• juglab / VoidSeg
  Notebooks for VoidSeg
  ☆16Updated 5 years ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 5 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆22Updated 3 months ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆28Updated 8 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated last month
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆33Updated 2 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆75Updated 6 months ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆39Updated 3 years ago
• funkelab / linajea
  ☆17Updated last year
• BBQuercus / deepBlink
  Threshold independent detection and localization of diffraction-limited spots.
  ☆34Updated 2 years ago
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆81Updated this week
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆55Updated last week
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆78Updated last year
• maweigert / neubias_academy_stardist
  ☆31Updated 3 years ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated 3 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 3 months ago
• michaellee1 / CellSeg
  ☆22Updated last year
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 3 years ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆53Updated 4 years ago