mehta-lab / microDLLinks
3D virtual staining with 2D and 2.5D U-Nets
☆31Updated 2 years ago
Alternatives and similar repositories for microDL
Users that are interested in microDL are comparing it to the libraries listed below
Sorting:
- Three dimensional cross-modal image inference☆160Updated last month
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- ☆32Updated 4 months ago
- ☆24Updated 5 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- multimodal whole slide image registration in a graph structure☆96Updated last year
- ☆24Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated last month
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 4 months ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- ☆31Updated 4 years ago
- U-net based segmentation of nuclei in microscopy images☆52Updated 7 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 4 months ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆36Updated 2 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Updated 4 months ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- Read and write life sciences file formats☆142Updated 5 months ago