mehta-lab / microDLLinks
3D virtual staining with 2D and 2.5D U-Nets
☆29Updated 2 years ago
Alternatives and similar repositories for microDL
Users that are interested in microDL are comparing it to the libraries listed below
Sorting:
- Three dimensional cross-modal image inference☆158Updated 4 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆30Updated 3 years ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ☆23Updated 2 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 4 years ago
- ☆32Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- multimodal whole slide image registration in a graph structure☆92Updated last year
- Robust quad-tree based registration on whole slide images☆20Updated 4 months ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- ☆25Updated 5 years ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 3 weeks ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆88Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 11 months ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated 2 years ago
- A whole-slide image reader for TensorFlow☆24Updated last week
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆42Updated 2 years ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆115Updated last week
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 3 years ago
- A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.☆59Updated 4 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- Notebooks for VoidSeg☆17Updated 5 years ago
- ☆31Updated 4 years ago