mehta-lab / microDL
3D virtual staining with 2D and 2.5D U-Nets
☆27Updated last year
Alternatives and similar repositories for microDL:
Users that are interested in microDL are comparing it to the libraries listed below
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆26Updated 2 years ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆25Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 6 years ago
- ☆31Updated 2 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- ☆21Updated last year
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated 2 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 2 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆33Updated 2 years ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆29Updated 3 years ago
- Notebooks for VoidSeg☆16Updated 4 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆52Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated last week
- Python package to export tensorflow models as DeepImageJ bundled models☆17Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆44Updated 3 months ago
- QuPath extension for Cellsparse☆17Updated last month
- Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection …☆46Updated 2 weeks ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆50Updated 3 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 4 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- Easily read and write ome-tiff images in python☆26Updated 8 months ago