fmi-basel / LSTreeLinks
LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
☆18Updated last year
Alternatives and similar repositories for LSTree
Users that are interested in LSTree are comparing it to the libraries listed below
Sorting:
- Particle tracking by solving linear assignment problem.☆53Updated last month
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- ☆35Updated 3 weeks ago
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- ☆38Updated last week
- ☆51Updated 2 months ago
- StarDist plugin for napari☆38Updated 10 months ago
- Multi-Object Tracker using Integer Linear Equations☆36Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆27Updated 2 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆54Updated 8 months ago
- Cell tracking and segmentation software☆120Updated last week
- Multiple file format reading directly into napari using pure Python☆37Updated 11 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆92Updated last week
- Transformer-based cell tracking for live-cell microscopy☆75Updated last month
- 3D shape analysis using deep learning☆24Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 months ago
- ☆21Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- A napari plugin for making animations☆84Updated 10 months ago
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- ☆22Updated last year
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- dask empowered fast4dreg☆11Updated 7 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- Browse your OMERO database from within napari.☆38Updated last week
- Running compute-intense parts of BigStitcher distributed☆26Updated this week