LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
☆20Aug 10, 2023Updated 2 years ago
Alternatives and similar repositories for LSTree
Users that are interested in LSTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference implementation of the Graph Exchange File Format☆37Updated this week
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆82Feb 3, 2026Updated 2 months ago
- ☆12Jun 29, 2021Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- Multi-Object Tracking with Integer Linear Equations☆38Mar 30, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Particle tracking by solving linear assignment problem.☆63Apr 1, 2026Updated last week
- Cell tracker designed for tracking intestinal organoids☆36Apr 3, 2026Updated last week
- ☆14Oct 24, 2025Updated 5 months ago
- Organoid Localization and Quantification Using Deep Convolutional Neural Networks☆30Jan 22, 2022Updated 4 years ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- ☆22Aug 17, 2023Updated 2 years ago
- Fractal backend☆19Apr 3, 2026Updated last week
- ☆29Dec 13, 2023Updated 2 years ago
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- python tools for BigDataViewer☆22Dec 29, 2024Updated last year
- ☆112Apr 2, 2026Updated last week
- 3D/4D volumetric rendering of microscopy data☆27Nov 10, 2025Updated 5 months ago
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated 6 months ago
- ☆42Apr 1, 2026Updated last week
- Unsupervised Instance Segmentation in Microscopy☆26Apr 3, 2024Updated 2 years ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Updated this week
- ☆15Dec 13, 2020Updated 5 years ago
- ☆18May 5, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Mar 30, 2026Updated last week
- Tools for handling FIB-SEM data and annotations☆22Apr 4, 2025Updated last year
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated last month
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- Utilities for formatting matplotlib figures☆31Feb 24, 2025Updated last year
- GPU-based 3D non-rigid volumetric registration☆47Aug 26, 2025Updated 7 months ago
- SegmenTation Analysis by ParaLlelization of 3D Datasets☆12Feb 22, 2024Updated 2 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆33Mar 12, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆12Apr 13, 2023Updated 2 years ago
- ☆34Jan 28, 2025Updated last year
- Content-adaptive storage and processing of large volumetric microscopy data using the Adaptive Particle Representation (APR)☆21Aug 21, 2024Updated last year
- Docsify plugin to work with namespaces☆12Jun 7, 2021Updated 4 years ago
- A python package for fitting splines.☆23Mar 3, 2026Updated last month
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆124Updated this week
- Connecting Java/ImgLib2 + Python/NumPy☆31Feb 9, 2026Updated 2 months ago