Alternatives and similar repositories for dynamorph

Users that are interested in dynamorph are comparing it to the libraries listed below

• KristinaUlicna / DeepTree
  Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.
  ☆30Updated 5 years ago
• hubmapconsortium / codex-pipeline
  CODEX data processing code
  ☆12Updated 2 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated last month
• KerenLab / CellSighter
  ☆34Updated last year
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆68Updated 11 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 2 weeks ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated last month
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 4 months ago
• peng-lab / BaSiCPy
  ☆87Updated 6 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated 2 months ago
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated last year
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated 2 weeks ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆99Updated last month
• CellProfiling / pipex
  A pipeline to transform images into valuable analysis items
  ☆14Updated 3 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆153Updated 10 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated last week
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated 10 months ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆179Updated last week
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆67Updated this week
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆97Updated 5 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆94Updated last month
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆180Updated last week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated this week
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆22Updated 3 weeks ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods_CPJUMP1
  ☆65Updated 7 months ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆98Updated 2 years ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month