mehta-lab / dynamorph
Learn morphological states of dynamic cells
☆12Updated last year
Alternatives and similar repositories for dynamorph:
Users that are interested in dynamorph are comparing it to the libraries listed below
- Piecewise alignment for layers of mosaics☆23Updated last month
- ☆30Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 4 years ago
- Cell tracker designed for tracking intestinal organoids☆21Updated 2 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆68Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 6 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- ☆31Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- Interactive visualization of spatial omics data☆48Updated this week
- ☆68Updated 2 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆20Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 3 months ago
- Toolbox for the analysis of smFISH images.☆58Updated last year
- Optimizing the Cell Painting assay for image-based profiling☆19Updated last month
- QuPath extension for Cellsparse☆18Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 10 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated this week
- ☆10Updated last year
- Cloud-based data annotation tools for biological images☆77Updated last year
- Integrated pipeline for multiplexed image analysis☆80Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆51Updated 3 months ago