mehta-lab / dynamorphLinks
Learn morphological states of dynamic cells
☆12Updated 2 years ago
Alternatives and similar repositories for dynamorph
Users that are interested in dynamorph are comparing it to the libraries listed below
Sorting:
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- ☆32Updated last week
- ☆34Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- Cloud-based data annotation tools for biological images☆81Updated last year
- ☆85Updated 4 months ago
- Piecewise alignment for layers of mosaics☆28Updated last month
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 10 months ago
- CODEX data processing code☆12Updated last month
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- A pipeline to transform images into valuable analysis items☆13Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- CellProfiler tutorial pipelines and images☆93Updated 3 months ago
- Find profile pairs and compute metrics between them.☆17Updated last month
- Multiple-choice microscopy pipeline☆136Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- An introduction to deepcell and deep learning☆151Updated 9 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month
- Python package for processing image-based profiling data☆119Updated this week
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆144Updated 5 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆21Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago