mehta-lab / dynamorphLinks
Learn morphological states of dynamic cells
☆12Updated 2 years ago
Alternatives and similar repositories for dynamorph
Users that are interested in dynamorph are comparing it to the libraries listed below
Sorting:
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- ☆37Updated 2 years ago
- CODEX data processing code☆12Updated 7 months ago
- Multiple-choice microscopy pipeline☆145Updated last week
- Cloud-based data annotation tools for biological images☆84Updated last year
- ☆91Updated 3 months ago
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- ☆32Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- An introduction to deepcell and deep learning☆156Updated last year
- CellProfiler tutorial pipelines and images☆99Updated this week
- multimodal whole slide image registration in a graph structure☆100Updated last year
- Integrated pipeline for multiplexed image analysis☆102Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- QuPath extension for Cellsparse☆19Updated 9 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated last month
- Interactive visualization of spatial omics data☆75Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated this week
- Development of PICASSO plugin for napari☆16Updated 3 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆80Updated 6 months ago
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated last week