mehta-lab / dynamorphLinks
Learn morphological states of dynamic cells
☆12Updated 2 years ago
Alternatives and similar repositories for dynamorph
Users that are interested in dynamorph are comparing it to the libraries listed below
Sorting:
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago
- CODEX data processing code☆12Updated 3 months ago
- ☆34Updated last year
- Cloud-based data annotation tools for biological images☆82Updated last year
- Piecewise alignment for layers of mosaics☆29Updated last month
- ☆32Updated 2 months ago
- ☆85Updated 7 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 5 months ago
- CellProfiler tutorial pipelines and images☆98Updated this week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- An introduction to deepcell and deep learning☆154Updated last year
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆182Updated this week
- Integrated pipeline for multiplexed image analysis☆98Updated 7 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- QuPath extension for Cellsparse☆19Updated 5 months ago
- Multiple-choice microscopy pipeline☆135Updated 3 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 11 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 3 weeks ago
- Interactive visualization of spatial omics data☆70Updated last week
- Raw format to OME-TIFF converter☆56Updated last month
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- Accurate and efficient spot detection for microscopy data☆106Updated 2 weeks ago
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 2 months ago
- Python package for processing image-based profiling data☆124Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Cell tracker designed for tracking intestinal organoids☆28Updated last week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 3 years ago