An R package to detect collective spatio-temporal phenomena
☆13Sep 25, 2025Updated 5 months ago
Alternatives and similar repositories for ARCOS
Users that are interested in ARCOS are comparing it to the libraries listed below
Sorting:
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 5 months ago
- Time arrow prediction for live-cell microscopy☆21Jun 17, 2024Updated last year
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 4 months ago
- Denoising via adaptive binning.☆13Jan 6, 2026Updated last month
- QuickFigures is a toolset for creating scientific figures see publication for details☆37Feb 1, 2026Updated last month
- Segment images utilizing pre-trained neural networks as feature extractors☆47Updated this week
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆20Updated this week
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Feb 14, 2026Updated 2 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55May 1, 2025Updated 10 months ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆27Feb 10, 2023Updated 3 years ago
- Fast reconstruction of spatial networks from bioimages.☆25Apr 25, 2025Updated 10 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Nov 6, 2025Updated 3 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated this week
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆130Aug 7, 2025Updated 6 months ago
- ImageJ macros and scripts written at the imaging facility MRI☆37Feb 11, 2026Updated 2 weeks ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Sep 17, 2020Updated 5 years ago
- Read and write ImageJ ROI format.☆85Feb 11, 2026Updated 2 weeks ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Dec 16, 2024Updated last year
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Feb 13, 2026Updated 2 weeks ago
- Code and data belonging to "Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule local…☆11Mar 7, 2022Updated 3 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Mar 14, 2025Updated 11 months ago
- Pure python/C++ micro-manager ecosystem☆46Updated this week
- A napari plugin for counting organoids from brightfield microscopy images with deep learning☆14Updated this week
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Notebooks to accompany sofroniew-vlasov-2015☆10May 18, 2019Updated 6 years ago
- rodinia benchmark modified to run with ENZO and pathcu instead of nvcc CUDA compiler☆12Jan 23, 2024Updated 2 years ago
- ☆12Feb 23, 2026Updated last week
- Detection, colocalization, and quantification of spots / puncta☆15Mar 22, 2023Updated 2 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆12Apr 24, 2024Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- ☆11Jan 26, 2024Updated 2 years ago
- ☆10Nov 29, 2024Updated last year
- A napari plugin to view and edit metadata☆13Updated this week