mehta-lab / VisCyLinks
computer vision models for single-cell phenotyping
☆76Updated last week
Alternatives and similar repositories for VisCy
Users that are interested in VisCy are comparing it to the libraries listed below
Sorting:
- Self-supervised models for encoding protein localization patterns from microscopy images☆78Updated 3 months ago
- Your Personal Assistant in Computational Bioimaging.☆45Updated 7 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated last month
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆57Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated 7 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆129Updated 3 months ago
- ☆20Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Cell tracking and segmentation software☆156Updated this week
- CellProfiler tutorial pipelines and images☆98Updated 3 weeks ago
- ☆32Updated 3 months ago
- Python package for deep learning based image to image transformation☆53Updated last week
- ☆66Updated 9 months ago
- Python package for processing image-based profiling data☆127Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated this week
- ☆195Updated 2 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 4 months ago
- ☆29Updated last month
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated last month
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆32Updated 4 months ago
- ☆89Updated last week
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Morphological features from images and masks made easy.☆37Updated 3 weeks ago
- Raw format to OME-TIFF converter☆56Updated 2 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆155Updated 3 months ago
- Codebase for training the SubCell models☆16Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year