Alternatives and similar repositories for VisCy

Users that are interested in VisCy are comparing it to the libraries listed below

• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 8 months ago
• peng-lab / BaSiCPy
  ☆81Updated 2 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 7 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated 2 months ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆30Updated 2 years ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆115Updated this week
• bioimage-io / bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆60Updated 2 months ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆22Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆85Updated last week
• instanseg / instanseg
  ☆167Updated last month
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 4 months ago
• KerenLab / CellSighter
  ☆33Updated last year
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆41Updated 2 months ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆44Updated 2 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last month
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated last week
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆77Updated last month
• haesleinhuepf / bia-bob
  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
  ☆114Updated this week
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆70Updated 2 months ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆28Updated last month
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆51Updated 11 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 8 months ago
• joonkeekim / mediar-napari
  ☆20Updated last year
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆76Updated last week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 9 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆58Updated this week
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆94Updated 2 weeks ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week