mehta-lab / VisCyLinks
computer vision models for single-cell phenotyping
☆66Updated last week
Alternatives and similar repositories for VisCy
Users that are interested in VisCy are comparing it to the libraries listed below
Sorting:
- Your Personal Assistant in Computational Bioimaging.☆44Updated 4 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 3 weeks ago
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.☆119Updated 2 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- Cell tracking and segmentation software☆134Updated last week
- ☆176Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 10 months ago
- ☆20Updated last year
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated last week
- ☆32Updated 3 weeks ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Cloud-based data annotation tools for biological images☆81Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆47Updated last week
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆143Updated 2 months ago
- Python package for deep learning based image to image transformation☆53Updated last week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆119Updated 2 weeks ago
- CellProfiler tutorial pipelines and images☆93Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- ☆87Updated 5 months ago
- ☆27Updated last month
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆178Updated this week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆82Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 7 months ago
- ☆65Updated 6 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Updated last month
- Open source Python library for building bioimage analysis pipelines☆177Updated last week
- ☆39Updated last year