computer vision models for single-cell phenotyping
☆93May 22, 2026Updated this week
Alternatives and similar repositories for VisCy
Users that are interested in VisCy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆53Updated this week
- 3D virtual staining with 2D and 2.5D U-Nets☆32Jul 29, 2023Updated 2 years ago
- Cell tracking and segmentation software☆177May 14, 2026Updated last week
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 7 months ago
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated 10 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- 3D shape analysis using deep learning☆31Oct 8, 2025Updated 7 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆86Mar 28, 2026Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Command-line client for Fractal☆49Updated this week
- Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.☆43Updated this week
- Segment images utilizing pre-trained neural networks as feature extractors☆52May 11, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Codebase for "A Foundation Model for Cell Segmentation"☆195Nov 11, 2025Updated 6 months ago
- 🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Pe…☆34Mar 25, 2026Updated 2 months ago
- Acquire: a multi-camera video streaming software focusing on microscopy☆24Oct 30, 2024Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆23Apr 23, 2026Updated last month
- ilastik plugin for napari☆15Mar 2, 2026Updated 2 months ago
- Google Colab notebook for Cellpose☆11Aug 21, 2025Updated 9 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Mar 26, 2026Updated last month
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Apr 20, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 3 months ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Jun 4, 2025Updated 11 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.☆10Jul 25, 2024Updated last year
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 6 months ago
- Segment Anything for Microscopy☆683Updated this week
- A collection of useful python utilities from True North Intelligent Algorithms☆46May 14, 2026Updated last week
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Time arrow prediction for live-cell microscopy☆22Jun 17, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- CUDA-accelerated 3D BioImage Computing (ICCV BIC 2025)☆30Apr 3, 2026Updated last month
- Place to discuss the future design of a universal microscope hardware interface☆16May 18, 2021Updated 5 years ago
- Transformer-based cell tracking for live-cell microscopy☆130Mar 31, 2026Updated last month
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆120Updated this week
- Extensible pipeline tool for processing optical pooled screens data.☆23Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆70Updated this week
- ☆220Feb 4, 2026Updated 3 months ago