biocompibens / SME
Smooth 2D manifold extraction from 3D image stack
☆21Updated 6 years ago
Alternatives and similar repositories for SME:
Users that are interested in SME are comparing it to the libraries listed below
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆15Updated 3 weeks ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆14Updated last year
- A general illumination correction method for optical microscopy.☆38Updated 3 years ago
- Process images using SimpleITK in napari☆20Updated 4 months ago
- python tools for BigDataViewer☆21Updated last month
- ☆12Updated 4 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆28Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 5 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated 5 months ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated last year
- ☆17Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- ☆16Updated 2 years ago
- A self-supervised denoising algorithm.☆24Updated 10 months ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- imaging demos☆9Updated 2 years ago
- ☆17Updated 2 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 4 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 3 years ago
- Guides and code for 3D nuclear instance segmentation☆20Updated last month
- A python library for advanced lattice light-sheet image analysis☆21Updated 4 years ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 4 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- ☆19Updated 2 weeks ago
- Dataset EXploration & Processing☆31Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago