biocompibens / SMELinks
Smooth 2D manifold extraction from 3D image stack
☆21Updated 7 years ago
Alternatives and similar repositories for SME
Users that are interested in SME are comparing it to the libraries listed below
Sorting:
- A general illumination correction method for optical microscopy.☆41Updated 3 years ago
- ☆16Updated 2 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- ☆12Updated 4 years ago
- imaging demos☆9Updated 2 years ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- PSFj - Know your microscope fluorescence☆21Updated 5 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 7 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated last month
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 9 months ago
- python tools for BigDataViewer☆22Updated 5 months ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 3 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆16Updated last year
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 8 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 3 weeks ago
- Process images using SimpleITK in napari☆21Updated last month
- Napari gaming☆17Updated 3 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 3 years ago
- ☆18Updated 2 years ago