☆40Apr 5, 2021Updated 5 years ago
Alternatives and similar repositories for DAseq
Users that are interested in DAseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Aug 29, 2023Updated 2 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 6 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆22Feb 20, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Apr 16, 2026Updated 2 weeks ago
- ☆12May 14, 2024Updated last year
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Cell type prioritization in single-cell data☆140Mar 26, 2026Updated last month
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- ☆15Aug 5, 2022Updated 3 years ago
- ☆55Nov 28, 2025Updated 5 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆76Aug 21, 2023Updated 2 years ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆76Nov 11, 2025Updated 5 months ago
- Gene set scoring for single-cell data☆192Feb 11, 2026Updated 2 months ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Jan 10, 2024Updated 2 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jun 19, 2025Updated 10 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆121Jan 22, 2024Updated 2 years ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆12Jul 6, 2021Updated 4 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- ☆46Jan 11, 2024Updated 2 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- ☆16Jun 17, 2021Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆124Oct 31, 2025Updated 6 months ago
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated 2 years ago
- GREP: Genome for REPositioning drugs☆43Jan 11, 2023Updated 3 years ago