☆43Apr 5, 2021Updated 5 years ago
Alternatives and similar repositories for DAseq
Users that are interested in DAseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 6 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 2 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- ☆17Jun 29, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12May 14, 2024Updated 2 years ago
- R package for semi-supervised single-cell data integration☆101Jan 27, 2026Updated 6 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Cell type prioritization in single-cell data☆146Mar 26, 2026Updated 4 months ago
- ☆78Aug 21, 2023Updated 2 years ago
- ☆61Jul 12, 2026Updated 3 weeks ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Framework for sensitive DE testing (using neighbourhoods)☆79Nov 11, 2025Updated 8 months ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- Gene set scoring for single-cell data☆203Apr 29, 2026Updated 3 months ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆18Jan 10, 2024Updated 2 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- Official implementation of GateNet☆15Jul 29, 2024Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆124Jan 22, 2024Updated 2 years ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆13Jul 6, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Aug 10, 2023Updated 3 years ago
- ☆48Jan 11, 2024Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- Codes for our NPNT paper at Nature Metabolism☆15Feb 9, 2024Updated 2 years ago
- ☆128Sep 4, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Immuological gene typing and annotation for genome assembly☆41Mar 13, 2025Updated last year
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆126Oct 31, 2025Updated 9 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Apr 16, 2025Updated last year
- Camiel's scATAC-seq analysis pipeline☆15Apr 15, 2024Updated 2 years ago