Alternatives and similar repositories for DAseq

Users that are interested in DAseq are comparing it to the libraries listed below

• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆97Updated 8 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆81Updated 5 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆46Updated 3 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆35Updated 3 weeks ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆58Updated last week
• Winnie09 / Lamian
  ☆61Updated 5 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆106Updated last year
• meichendong / SCDC
  SCDC
  ☆46Updated 7 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆66Updated 4 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆45Updated last week
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆76Updated 2 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆95Updated last week
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• vibscc / DALI
  R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem
  ☆21Updated 9 months ago
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆56Updated 11 months ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated last week
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆46Updated 2 years ago