KlugerLab / DAseq
☆39Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for DAseq
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last year
- scWGCNA☆55Updated 2 years ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- SCDC☆42Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated last week
- ☆48Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆37Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Cell type pipes for R☆51Updated 9 months ago
- ☆37Updated 2 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year