☆44Apr 5, 2021Updated 5 years ago
Alternatives and similar repositories for DAseq
Users that are interested in DAseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- Codes used for all the data analysis steps in the paper "Single-cell transcriptomics identifies an effectorness gradient shaping the resp…☆16Apr 15, 2020Updated 6 years ago
- Locate transgenic insertion sites☆11Mar 14, 2023Updated 3 years ago
- Identify spatially variable genes by projecting to morphologically relevant curves☆11Jul 12, 2026Updated 3 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆20Aug 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆78Aug 21, 2023Updated 3 years ago
- R package for semi-supervised single-cell data integration☆104Aug 19, 2026Updated 2 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆126Jan 22, 2024Updated 2 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- Code to reproduce analysis of Milo manuscript☆16Aug 3, 2022Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 5 years ago
- Gene set scoring for single-cell data☆214Sep 8, 2026Updated last month
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆13Jul 6, 2021Updated 5 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 11 months ago
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 6 years ago
- ☆17Jun 29, 2026Updated 4 months ago
- Cell type prioritization in single-cell data☆153Mar 26, 2026Updated 7 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- ☆12May 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆347Nov 1, 2022Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆127Apr 16, 2025Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆15Jan 21, 2025Updated last year
- ☆17Jun 17, 2021Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- Latent Embedding Multivariate Regression☆103Jul 29, 2026Updated 3 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆56Dec 13, 2020Updated 5 years ago
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- ☆36Jun 15, 2026Updated 4 months ago
- ☆185May 4, 2026Updated 5 months ago
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆14Oct 19, 2026Updated last week
- ☆10Nov 5, 2023Updated 2 years ago
- ☆63Jul 12, 2026Updated 3 months ago