rpolicastro / scProportionTestLinks
☆74Updated 2 years ago
Alternatives and similar repositories for scProportionTest
Users that are interested in scProportionTest are comparing it to the libraries listed below
Sorting:
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆120Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆134Updated 5 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- Create stacked violin plot☆51Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆72Updated 4 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆64Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- ☆87Updated 4 years ago
- ☆63Updated 5 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- A Shiny web app for mapping datasets using Seurat v4☆141Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆120Updated 4 months ago