rpolicastro / scProportionTestLinks
☆74Updated 2 years ago
Alternatives and similar repositories for scProportionTest
Users that are interested in scProportionTest are comparing it to the libraries listed below
Sorting:
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆119Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆134Updated 5 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆72Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- A Shiny web app for mapping datasets using Seurat v4☆141Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- R package for semi-supervised single-cell data integration☆92Updated 2 weeks ago
- ☆120Updated 3 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- ☆63Updated 5 years ago
- ☆64Updated 6 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆113Updated 8 months ago
- Tools for single-cell data processing☆130Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year