Alternatives and similar repositories for sierra

Users that are interested in sierra are comparing it to the libraries listed below

• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆153Updated last month
• almiheenko / AGB
  Interactive visualization of assembly graphs
  ☆83Updated 3 years ago
• wdecoster / nanoQC
  Quality control tools for nanopore sequencing data
  ☆111Updated last year
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆117Updated 10 months ago
• epi2me-labs / wf-bacterial-genomes
  Small variant calling for haploid samples
  ☆48Updated 3 weeks ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆158Updated 6 months ago
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆140Updated 2 months ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆176Updated last year
• ksahlin / isONclust
  De novo clustering of long transcript reads into genes
  ☆70Updated 9 months ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆72Updated this week
• artic-network / primer-schemes
  Primer schemes for real-time genome epidemiology
  ☆30Updated 2 years ago
• human-pangenomics / hpp_pangenome_resources
  ☆126Updated 2 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆96Updated last year
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆126Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated last week
• PacificBiosciences / pbAA
  ☆27Updated last month
• SamStudio8 / reticulatus
  A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
  ☆67Updated 4 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆102Updated last month
• nf-core / viralrecon
  Assembly and intrahost/low-frequency variant calling for viral samples
  ☆154Updated last week
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆50Updated 9 months ago
• linsalrob / mgi-adapters
  Trim adapters from MGI sequence data
  ☆14Updated 2 years ago
• aresti / primalscheme
  a tool for designing primer panels for multiplex PCR.
  ☆106Updated last year
• DiltheyLab / MetaMaps
  Long-read metagenomic analysis
  ☆109Updated 2 years ago
• jodyphelan / tbdb
  Standard database for the TBProfiler tool
  ☆31Updated 5 months ago
• wdecoster / nanostat
  Create statistic summary of an Oxford Nanopore read dataset
  ☆131Updated 3 years ago
• BenLangmead / aws-indexes
  Catalog of genomic indexes freely available from public clouds
  ☆66Updated last week
• epi2me-labs / wf-amplicon
  ☆41Updated last month
• human-pangenomics / hpp_production_workflows
  WDL’s and Dockerfiles for assembly QC process
  ☆72Updated 6 months ago
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆102Updated last week
• epi2me-labs / pychopper
  cDNA read preprocessing
  ☆83Updated last year