artic-network / fieldbioinformaticsLinks
The ARTIC fieldbioinformatics pipeline
☆127Updated last week
Alternatives and similar repositories for fieldbioinformatics
Users that are interested in fieldbioinformatics are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆142Updated 2 weeks ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆131Updated last week
- Long-read mock community experiments☆104Updated 4 years ago
- Foreign Contamination Screening caller scripts and documentation☆153Updated 9 months ago
- ☆152Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆207Updated 2 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 5 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆211Updated 3 months ago
- ☆81Updated 5 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆185Updated last month
- ☆223Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆146Updated 2 weeks ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆46Updated 3 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆152Updated this week
- Interactive quality assessment of genome assemblies☆116Updated last week
- BSR-Based Allele Calling Algorithm☆147Updated last week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- Development version of Easyfig☆102Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆145Updated last week
- ☆228Updated 11 months ago
- a tool for designing primer panels for multiplex PCR.