a tool for designing primer panels for multiplex PCR.
☆113Feb 5, 2024Updated 2 years ago
Alternatives and similar repositories for primalscheme
Users that are interested in primalscheme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.☆138Oct 19, 2026Updated last week
- The Zika bioinformatics pipeline☆37Mar 29, 2020Updated 6 years ago
- ARTIC nanopore protocol for nCoV2019 novel coronavirus☆171Mar 22, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆58Mar 23, 2026Updated 7 months ago
- Read Assignment, Mapping, and Phylogenetic Analysis in Real Time☆87Mar 2, 2026Updated 7 months ago
- Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation☆123Updated this week
- An R Package for Multiplex PCR Primer Design and Analysis☆31Jul 12, 2025Updated last year
- The ARTIC fieldbioinformatics pipeline☆136Aug 26, 2026Updated 2 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆44Oct 7, 2026Updated 3 weeks ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design☆73May 26, 2025Updated last year
- Primalscheme3. Generation of highly multiplex primerschemes☆28Oct 20, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Ultrafast identification of signature sequences in microbial genomes☆26Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆265Updated this week
- Read contamination removal☆24Jan 24, 2024Updated 2 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Oct 9, 2026Updated 3 weeks ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆92Oct 3, 2026Updated 3 weeks ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PCR Primer Quality Control☆77Oct 15, 2026Updated 2 weeks ago
- ☆18Jul 27, 2023Updated 3 years ago
- Scan contig files against PubMLST typing schemes☆307Jun 17, 2026Updated 4 months ago
- Repo for PrimerSchemes☆22Updated this week
- VIGOR4☆24Aug 15, 2025Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Primer schemes for real-time genome epidemiology☆32Jun 14, 2023Updated 3 years ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆49May 14, 2026Updated 5 months ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆66Nov 7, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Finds SNP sites from a multi-FASTA alignment file☆280Dec 16, 2020Updated 5 years ago
- A tool for managing your pores☆10Jul 22, 2026Updated 3 months ago
- Reference-based consensus creation☆61Updated this week
- Ultra-rapid detection of viral variants directly from sequencing data☆49Sep 16, 2026Updated last month
- Highly sensitive pathogen detection☆12Oct 5, 2020Updated 6 years ago
- MFEprimer-2.0: A fast thermodynamics-based program for checking PCR primer specificity☆41Feb 16, 2021Updated 5 years ago
- Multiplex Primer Design☆21Oct 30, 2020Updated 6 years ago