jonas-fuchs / varVAMPLinks
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
☆44Updated 3 months ago
Alternatives and similar repositories for varVAMP
Users that are interested in varVAMP are comparing it to the libraries listed below
Sorting:
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated 2 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☆30Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Gene-flank analysis tool☆34Updated 11 months ago
- tree visualization for tree + annotation data☆43Updated 5 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Evaluating Nanopore-based bacterial variant calling☆21Updated 4 months ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated last month
- Microbial agile accurate SNP Typer☆29Updated last year
- Eukaryotic genome annotation software.☆22Updated 2 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Recombination-free trees☆62Updated 3 months ago
- Convert genbank files to a swath of other formats☆23Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago