jonas-fuchs / varVAMP
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
☆34Updated 4 months ago
Alternatives and similar repositories for varVAMP:
Users that are interested in varVAMP are comparing it to the libraries listed below
- Bacterial GWAS analysis☆34Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆30Updated last month
- Precise host read removal☆84Updated 3 weeks ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- Evaluating Nanopore-based bacterial variant calling☆15Updated last month
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- Gene-flank analysis tool☆26Updated last month
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated last week
- Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.☆19Updated 8 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆44Updated last month
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 6 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Recombination-free trees☆56Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year
- IslandPath standalone software☆31Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆38Updated last month