Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
☆54Mar 23, 2026Updated 4 months ago
Alternatives and similar repositories for varVAMP
Users that are interested in varVAMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 8 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆37May 23, 2024Updated 2 years ago
- ☆16May 1, 2025Updated last year
- Multiplex PCR design, in silico☆24Mar 4, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated 10 months ago
- Optimise PCR primer-set grouping for genetics research☆18Jun 3, 2026Updated last month
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 6 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆42Jul 2, 2026Updated 3 weeks ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Repo for PrimerSchemes☆19Jul 6, 2026Updated 3 weeks ago
- a tool for designing primer panels for multiplex PCR.☆108Feb 5, 2024Updated 2 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- Visualize microbial evolution at the SNP level!☆16Aug 12, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated 3 weeks ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 2 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- ☆24Aug 1, 2025Updated 11 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆28Feb 6, 2023Updated 3 years ago
- Primalscheme3. Generation of highly multiplex primerschemes☆26Dec 4, 2025Updated 7 months ago
- ☆12Jan 29, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated this week
- SARS-CoV-2 workflow for nanopore sequence data☆42Jul 17, 2026Updated last week
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆64Nov 7, 2023Updated 2 years ago
- ☆30Mar 6, 2025Updated last year
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆48Apr 24, 2024Updated 2 years ago
- ☆18Jul 27, 2023Updated 3 years ago
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆58Updated this week
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆24Oct 21, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 8 months ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- ☆24May 13, 2024Updated 2 years ago
- Reference-based consensus creation☆61Updated this week
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Dec 1, 2025Updated 7 months ago