Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
☆48Mar 23, 2026Updated last week
Alternatives and similar repositories for varVAMP
Users that are interested in varVAMP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 4 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 6 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Optimise PCR primer-set grouping for genetics research☆18Feb 24, 2026Updated last month
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated this week
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆33May 23, 2024Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- Repo for PrimerSchemes☆17Feb 24, 2026Updated last month
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacteria…☆46Apr 24, 2024Updated last year
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- ☆23May 13, 2024Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 4 months ago
- finding conserved regions in highly diverse genomes☆16Jun 1, 2025Updated 9 months ago
- a tool for designing primer panels for multiplex PCR.☆107Feb 5, 2024Updated 2 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆79Sep 10, 2025Updated 6 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- ☆30Mar 6, 2025Updated last year
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- Reference-based consensus creation☆60Updated this week
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆22Aug 15, 2025Updated 7 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Primalscheme3. Generation of highly multiplex primerschemes☆22Dec 4, 2025Updated 3 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 9 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- Efficient phylogenetic clustering of viral sequences☆94Nov 19, 2025Updated 4 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 3 months ago
- Genome size estimation from long read overlaps☆81Mar 9, 2026Updated 3 weeks ago
- ☆12Jan 29, 2020Updated 6 years ago