☆134Aug 29, 2024Updated last year
Alternatives and similar repositories for CIAlign
Users that are interested in CIAlign are comparing it to the libraries listed below
Sorting:
- Better Alignments with Translated HMMER☆24Feb 26, 2026Updated last week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆221Jan 10, 2026Updated last month
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆82Updated this week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆84Feb 27, 2026Updated last week
- Align proteins to genomes with splicing and frameshift☆395Jan 5, 2026Updated 2 months ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Gene cluster comparison figure generator☆637Dec 22, 2025Updated 2 months ago
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- spruceup☆25Aug 15, 2025Updated 6 months ago
- ULTRA Locates Tandemly Repetitive Areas☆41Oct 23, 2025Updated 4 months ago
- Find Unique genomic Regions☆32Feb 25, 2026Updated last week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Nov 25, 2025Updated 3 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Updated this week
- Remove human reads from a sequencing run☆48Updated this week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Jan 23, 2026Updated last month
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- sfasta☆35Feb 25, 2026Updated last week
- k-mers and the like☆22Updated this week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated last month
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Jan 30, 2026Updated last month
- Nail is an Alignment Inference tooL☆55Feb 21, 2026Updated 2 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- Assembly statistic visualisation☆95Dec 22, 2023Updated 2 years ago
- Creating alignment plots from bam files☆119Updated this week
- ☆33Aug 2, 2022Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- A list of software for pangenomics☆176Feb 18, 2026Updated 2 weeks ago
- An accurate GFF3/GTF lift over pipeline☆530Aug 1, 2023Updated 2 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 6 months ago
- A package to annotate protein sequences☆61Feb 23, 2025Updated last year
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 3 months ago
- ☆18Jan 29, 2025Updated last year
- Just another minhash implementation.☆12Feb 25, 2026Updated last week
- R interface to megadepth: BigWig and BAM related utilities☆13Dec 12, 2024Updated last year
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago