☆137Aug 29, 2024Updated 2 years ago
Alternatives and similar repositories for CIAlign
Users that are interested in CIAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Better Alignments with Translated HMMER☆27Updated this week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆270Jul 20, 2026Updated last month
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆93Aug 18, 2026Updated 2 weeks ago
- spruceup☆25Aug 15, 2025Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Align proteins to genomes with splicing and frameshift☆417Jan 5, 2026Updated 8 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated last year
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆89Aug 19, 2026Updated 2 weeks ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated last month
- Gene cluster comparison figure generator☆653Dec 22, 2025Updated 8 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 5 months ago
- Genome size estimation from long read overlaps☆94Updated this week
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated this week
- k-mers and the like☆23Aug 30, 2026Updated last week
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 9 months ago
- Assembled Genomes Compressor☆188Jul 22, 2026Updated last month
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 4 months ago
- ULTRA Locates Tandemly Repetitive Areas☆40Aug 28, 2026Updated last week
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆14Aug 10, 2026Updated 3 weeks ago
- Nail is an Alignment Inference tooL☆66Aug 22, 2026Updated 2 weeks ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆126Apr 20, 2026Updated 4 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆114Jul 11, 2026Updated last month
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆269Updated this week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Jul 17, 2026Updated last month
- A tool to root phylogenies☆23Sep 5, 2024Updated 2 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆114Jan 30, 2026Updated 7 months ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated last year
- sfasta☆35Feb 25, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Creating alignment plots from bam files☆132Updated this week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- An accurate GFF3/GTF lift over pipeline☆552Aug 1, 2023Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- Pairwise whole genome aligner☆244Updated this week
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆42Oct 28, 2025Updated 10 months ago
- Identify and find telomeres, or telomeric repeats in a genome.☆176Nov 24, 2025Updated 9 months ago