☆135Aug 29, 2024Updated last year
Alternatives and similar repositories for CIAlign
Users that are interested in CIAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Better Alignments with Translated HMMER☆26Updated this week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆256Apr 15, 2026Updated 2 months ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆90May 6, 2026Updated last month
- spruceup☆25Aug 15, 2025Updated 10 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Align proteins to genomes with splicing and frameshift☆404Jan 5, 2026Updated 5 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆86Jun 4, 2026Updated last week
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 10 months ago
- Gene cluster comparison figure generator☆642Dec 22, 2025Updated 5 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 2 months ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- k-mers and the like☆22May 26, 2026Updated 3 weeks ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assembled Genomes Compressor☆182May 6, 2026Updated last month
- ULTRA Locates Tandemly Repetitive Areas☆40Oct 23, 2025Updated 7 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated 2 months ago
- Remove human reads from a sequencing run☆48Jun 8, 2026Updated last week
- Nail is an Alignment Inference tooL☆61May 14, 2026Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Mar 27, 2026Updated 2 months ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆112Jan 30, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 3 months ago
- sfasta☆35Feb 25, 2026Updated 3 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆79Aug 30, 2016Updated 9 years ago
- ☆18Jan 29, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆545Aug 1, 2023Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 6 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 9 months ago
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆49Jun 9, 2026Updated last week
- Creating alignment plots from bam files☆129Jun 3, 2026Updated last week
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆29Jun 17, 2025Updated 11 months ago
- ☆32Aug 2, 2022Updated 3 years ago