☆134Aug 29, 2024Updated last year
Alternatives and similar repositories for CIAlign
Users that are interested in CIAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Better Alignments with Translated HMMER☆25Mar 10, 2026Updated 2 weeks ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆222Updated this week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆87Mar 14, 2026Updated last week
- spruceup☆25Aug 15, 2025Updated 7 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Align proteins to genomes with splicing and frameshift☆396Jan 5, 2026Updated 2 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆82Updated this week
- Gene cluster comparison figure generator☆638Dec 22, 2025Updated 3 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 7, 2026Updated 2 weeks ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆22Nov 25, 2025Updated 4 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Jul 21, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- ULTRA Locates Tandemly Repetitive Areas☆40Oct 23, 2025Updated 5 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Jun 26, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated 2 months ago
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 2 weeks ago
- Nail is an Alignment Inference tooL☆54Mar 19, 2026Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆53Jan 23, 2026Updated 2 months ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆109Jan 30, 2026Updated last month
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆110Feb 28, 2026Updated 3 weeks ago
- sfasta☆35Feb 25, 2026Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Aug 30, 2016Updated 9 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- ☆18Jan 29, 2025Updated last year
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- Sorting and subsampling phylogenomic datasets☆30Apr 9, 2025Updated 11 months ago
- ☆32Aug 2, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 4 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 7 months ago
- RepeatIdentifier☆72Mar 19, 2025Updated last year
- Creating alignment plots from bam files☆121Mar 13, 2026Updated 2 weeks ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆28Jun 17, 2025Updated 9 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆59Jun 4, 2025Updated 9 months ago