jfarek / xatlasLinks
☆30Updated 3 years ago
Alternatives and similar repositories for xatlas
Users that are interested in xatlas are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- ☆48Updated last year
- Structural variant caller☆54Updated 3 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- ☆31Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago