jfarek / xatlasLinks
☆32Updated 3 years ago
Alternatives and similar repositories for xatlas
Users that are interested in xatlas are comparing it to the libraries listed below
Sorting:
- Population-wide Deletion Calling☆35Updated 8 months ago
- Method to optimally select samples for validation and resequencing☆29Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 3 months ago
- Working space for the GIAB TR benchmarking project☆23Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- SV genotyping with long reads☆40Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Archived version 1.0.2☆16Updated 6 years ago
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 9 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- ☆50Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- ☆21Updated 6 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- ☆21Updated 10 months ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- ☆31Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago