☆32Aug 2, 2022Updated 4 years ago
Alternatives and similar repositories for xatlas
Users that are interested in xatlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆30Jan 21, 2026Updated 9 months ago
- ☆14Sep 20, 2026Updated last month
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- ☆42May 19, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆26Mar 11, 2026Updated 7 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- A fast, robust and accurate variant calling software for human germline DNA analysis☆15Jun 30, 2026Updated 4 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- ☆12Jul 1, 2026Updated 3 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- A context-based long-read simulator☆15Oct 12, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Oct 22, 2019Updated 7 years ago
- ☆29May 12, 2026Updated 5 months ago
- Accelerated short-read alignment, derived from bwa-mem2 — drop-in replacement with correctness fixes, performance improvements, single-bi…☆60Updated this week
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆46Updated this week
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Ara…☆11Mar 16, 2026Updated 7 months ago
- Pangenome diversity from k-mers or genes☆13Sep 22, 2026Updated last month
- Telomere compliment tools☆28Nov 17, 2025Updated 11 months ago
- Toolkit for calling structural variants using short or long reads☆120Aug 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆21Nov 1, 2019Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆59Feb 17, 2022Updated 4 years ago
- Phased structural variant discovery in pangenomes☆44Oct 9, 2026Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- A pipeline for extracting Presence-Absence Variations (PAVs) in eukaryotic and prokaryotic genomes across multiple assemblies.☆11May 21, 2026Updated 5 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆21Updated this week
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- ☆28Feb 17, 2021Updated 5 years ago
- base-level dotplots from PAF alignments☆36Updated this week