jfarek / xatlas
☆29Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for xatlas
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- SV genotyping with long reads☆40Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆23Updated 6 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Population-wide Deletion Calling☆34Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- ☆45Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Structural variant caller☆54Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated 3 weeks ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆53Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- A VCF comparison engine for structual variant benchmarking☆19Updated 6 months ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- Tumour-only somatic mutation calling using long reads☆24Updated last week
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- ☆25Updated 2 months ago
- Working space for the GIAB TR benchmarking project☆20Updated 2 weeks ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Visualising discordant reads☆14Updated 9 years ago