jfarek / xatlas
☆29Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for xatlas
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- SV genotyping with long reads☆40Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week
- Population-wide Deletion Calling☆35Updated 2 months ago
- Improved Phased Assembler☆28Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆31Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆27Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- Simple script to generate whole-genome coverage plots☆18Updated 9 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- Structural variant caller☆54Updated 2 years ago
- ☆27Updated 3 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆46Updated 5 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆19Updated 5 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Working space for the GIAB TR benchmarking project☆20Updated last month
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago