althonos / pytrimalLinks
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
☆28Updated last month
Alternatives and similar repositories for pytrimal
Users that are interested in pytrimal are comparing it to the libraries listed below
Sorting:
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆55Updated last year
- ☆31Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 weeks ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 4 months ago
- MGnify API toolkit☆19Updated 8 months ago
- A lightweight platform-accelerated library for biological motif scanning using position weight matrices.☆56Updated last month
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆29Updated 6 months ago
- Nanopore UMI-linked consensus sequencing☆16Updated 4 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated 9 months ago
- Protein Sequence Annotation with Language Models☆24Updated 4 months ago
- Protein orthologous group assignment with deep learning☆28Updated 8 months ago
- Nail is an Alignment Inference tooL☆52Updated this week
- Find common blocks and differences between DNA sequences☆42Updated 6 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated 3 weeks ago
- ☆33Updated 2 months ago
- ☆24Updated last year
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆59Updated last year
- A genome browser in your Jupyter notebook☆31Updated 4 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated last week
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- ☆16Updated 6 months ago