SWift and Optimized Recognition of protein Domains
☆30Apr 6, 2026Updated last month
Alternatives and similar repositories for SWORD2
Users that are interested in SWORD2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆22Sep 1, 2025Updated 8 months ago
- Domain-PFP is a self-supervised method to predict protein functions from the domains☆13Nov 1, 2023Updated 2 years ago
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆32Oct 14, 2024Updated last year
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17May 15, 2026Updated last week
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detection of the structural, evolutionary and functional relationship between different proteins and protein families requires comparativ…☆15Sep 22, 2023Updated 2 years ago
- Deep learning-based language model for glycan sequences☆17Jan 17, 2020Updated 6 years ago
- DeepMainmast☆15Aug 12, 2024Updated last year
- Automatic atomic model building program for cryo-EM maps☆169Apr 14, 2026Updated last month
- Complete saturation mutagenesis of a protein using ESM☆18Feb 20, 2024Updated 2 years ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 11 months ago
- ☆18Jan 19, 2026Updated 4 months ago
- ☆33Nov 2, 2023Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Enables using Boltz-1/1x to predict the structure of arbitrary covalent modifications / Non-Canonical Amino Acids. Covalent bonds are enf…☆21May 21, 2025Updated last year
- Differentiable Pairing using Alignment-based Language Models☆25Jan 5, 2024Updated 2 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated 2 months ago
- Wrapper to protein secondary structure calculation packages☆13Apr 3, 2025Updated last year
- Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"☆13Nov 2, 2023Updated 2 years ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆29May 10, 2026Updated last week
- TUnA: Transformer-based Uncertainty Aware model for PPI Prediction☆17Dec 21, 2025Updated 5 months ago
- Designer scaffolded DNA DX-based wireframe lattices☆14Jul 28, 2018Updated 7 years ago
- Python library & CLI to create, view and edit PFB files☆14Apr 24, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Throughput PhATE processing of draft or finished phage genomes☆14Apr 19, 2021Updated 5 years ago
- multiPhATE with comparative genomics☆18Jun 14, 2021Updated 4 years ago
- ☆30Aug 27, 2025Updated 8 months ago
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆14Feb 13, 2023Updated 3 years ago
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆11Apr 7, 2023Updated 3 years ago
- Official code release for "INPC: Implicit Neural Point Clouds for Radiance Field Rendering" and "A Bag of Tricks for Efficient Implicit N…☆35Feb 23, 2026Updated 2 months ago
- Detect and erase gold fiducials in cryo-EM images☆15May 27, 2025Updated 11 months ago
- A potential solution to the early-stage small molecule hit identification☆16Jan 27, 2026Updated 3 months ago
- Pairwise machine learning models for phage-host interaction prediction☆21Jun 23, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆27Feb 27, 2023Updated 3 years ago
- automated on-the-fly tilt-series alignment☆11Jul 6, 2021Updated 4 years ago
- Explicit pytorch implementation of NeRF☆13Sep 21, 2023Updated 2 years ago
- ☆10Dec 15, 2023Updated 2 years ago
- Generate usage documentation in Markdown format from Python scripts using argparse☆17Apr 13, 2026Updated last month
- This is a Python implementation of the sequence design algorithm DAEDALUS for scaffolded DNA origami☆19May 11, 2026Updated last week
- ☆10Feb 8, 2023Updated 3 years ago