DSIMB / SWORD2
SWift and Optimized Recognition of protein Domains
☆24Updated last month
Related projects ⓘ
Alternatives and complementary repositories for SWORD2
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. https…☆82Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆84Updated 3 months ago
- ☆38Updated 2 months ago
- Structure prediction of alternative protein conformations☆71Updated 2 months ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆70Updated last week
- ☆70Updated 6 months ago
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆43Updated 2 months ago
- AlphaFold-initiated replica exchange protein docking☆45Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆23Updated 3 weeks ago
- ☆74Updated last month
- open source code for Tencent tFold☆68Updated 6 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆64Updated 2 months ago
- Python interface for the RCSB PDB search API.☆53Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 6 months ago
- ☆36Updated last year
- Improved antibody structure-based design using inverse folding☆75Updated 2 months ago
- protein docking stuff☆36Updated 2 months ago
- ☆35Updated 10 months ago
- Tool for modelling the CDRs of antibodies☆45Updated last year
- A collection of *fold* tools☆19Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆52Updated 9 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆25Updated 3 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 5 months ago
- ☆65Updated 3 weeks ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- A domain parser for Alphafold models☆32Updated 11 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆70Updated 4 months ago
- ☆42Updated 7 months ago
- AlphaBind code + model accompanying pre-print☆25Updated this week
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆62Updated 4 months ago