DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's internal settings with command-line flags for use with other domain definitions.
☆13Dec 13, 2023Updated 2 years ago
Alternatives and similar repositories for DomainMapper
Users that are interested in DomainMapper are comparing it to the libraries listed below
Sorting:
- Transformer for protein function prediction (version 2)☆15Jan 8, 2026Updated last month
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Mar 27, 2024Updated last year
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆43May 15, 2024Updated last year
- A Python script to map PDB ID + chain ID to UniProt ID.☆18Mar 7, 2024Updated last year
- A domain parser for Alphafold models☆46Dec 12, 2023Updated 2 years ago
- ☆47Sep 25, 2024Updated last year
- Conversion of PDBx/mmCIF files to best effort/minimal PDB files☆23Nov 1, 2024Updated last year
- Direct coupling analysis software for protein and RNA sequences☆58Jul 21, 2025Updated 7 months ago
- ☆32Updated this week
- ☆60Nov 21, 2022Updated 3 years ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆30Sep 17, 2025Updated 5 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆27Jul 15, 2025Updated 7 months ago
- Fast protein structure searching or your money back☆118Jan 14, 2026Updated last month
- Detect, analyze, and visualize protein symmetry☆30Dec 19, 2025Updated 2 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Jan 22, 2026Updated last month
- Biological prediction models made simple.☆49Jan 13, 2026Updated last month
- Code for paired TCR data analysis from TIRTL-seq experiments☆10Nov 24, 2025Updated 3 months ago
- ☆39Jun 25, 2025Updated 8 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last week
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Automate dating apps with AI☆19Jan 18, 2024Updated 2 years ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- ☆91Sep 25, 2024Updated last year
- Autoregressive networks for protein☆38Feb 27, 2025Updated last year
- Deciphering protein evolution and fitness landscapes with latent space models☆37Nov 2, 2021Updated 4 years ago
- ☆10Dec 17, 2019Updated 6 years ago
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- ☆54Dec 10, 2025Updated 2 months ago
- ☆10Apr 30, 2025Updated 10 months ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated 2 months ago
- ☆13Mar 26, 2024Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆45May 22, 2025Updated 9 months ago
- CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.☆13Oct 18, 2021Updated 4 years ago
- A simulation engine for compartmental models☆14Jan 28, 2026Updated last month
- Evolutionary velocity with protein language models☆97Dec 9, 2025Updated 2 months ago
- Tools to create and search a Python-based database of crystallization conditions and sequences pulled from the PDB☆12Jan 8, 2021Updated 5 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year