[NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction
☆34Mar 18, 2025Updated last year
Alternatives and similar repositories for MSAGen
Users that are interested in MSAGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MSAGPT☆39Nov 20, 2024Updated last year
- Pipeline for exploring protein families using homology based or vector representation based methods to generate clusters in sequence spac…☆18Jul 27, 2026Updated 3 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- ☆11Mar 27, 2026Updated 7 months ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆73Apr 13, 2026Updated 6 months ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆17Mar 27, 2024Updated 2 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- "Fast and accurate protein stoichiometry prediction"☆19Oct 9, 2026Updated 3 weeks ago
- A tool for protein and protein complex structure prediction.☆30Jun 13, 2025Updated last year
- Identifying amino acids important to AlphaFold!☆11Oct 20, 2026Updated 2 weeks ago
- Modelling protein conformations with Alphafold3☆17Updated this week
- A comprehensive resource of binding sites on human surface proteins with binder seeds☆16Feb 26, 2025Updated last year
- Bi-Encoder approach for large-scale protein-peptide binding search☆14Jun 14, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆111Nov 28, 2023Updated 2 years ago
- EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST☆11Apr 4, 2024Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆156Apr 16, 2025Updated last year
- ☆53Sep 25, 2024Updated 2 years ago
- ☆19Aug 31, 2025Updated last year
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆236Oct 10, 2026Updated 3 weeks ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 8 months ago
- Functions and classes for doing Gaussian process models of proteins☆11Apr 13, 2018Updated 8 years ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆14Mar 19, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Jun 25, 2025Updated last year
- A set a basic Python scripts to edit a multiple sequence alignment and generate a protein consensus sequence☆21Jun 9, 2022Updated 4 years ago
- ☆19Oct 4, 2022Updated 4 years ago
- ☆95Sep 25, 2024Updated 2 years ago
- ☆41Apr 24, 2018Updated 8 years ago
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆31Sep 13, 2024Updated 2 years ago
- Heuristic energy-based cyclic peptide design☆17Feb 21, 2025Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆63Jun 17, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Nov 22, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- VenusFold☆16Sep 14, 2026Updated last month
- Boltz2 Notebook – A streamlined Colab-based pipeline for protein structure prediction and binding affinity analysis using the Boltz2 deep…☆19Oct 27, 2026Updated last week
- ☆16Mar 5, 2026Updated 8 months ago
- POC Nextflow pipeline to run the Chai-1, SOTA model for biomolecular structure prediction☆11Updated this week
- ☆79Oct 17, 2022Updated 4 years ago