☆25Apr 26, 2023Updated 2 years ago
Alternatives and similar repositories for cdna-display-proteolysis-pipeline
Users that are interested in cdna-display-proteolysis-pipeline are comparing it to the libraries listed below
Sorting:
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated 10 months ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- ☆16Dec 10, 2024Updated last year
- ☆47Sep 25, 2024Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆32Jan 17, 2023Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆39Sep 16, 2025Updated 5 months ago
- ☆74Feb 13, 2026Updated 3 weeks ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Feb 25, 2026Updated last week
- Tools making use of BiopLib☆18Nov 21, 2025Updated 3 months ago
- rebuilds and completes models of protein complexes using AlphaFold2☆16Feb 26, 2026Updated last week
- Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Six…☆43Updated this week
- TMol☆57Updated this week
- ☆96Oct 14, 2025Updated 4 months ago
- Scripts to benchmark and train foldseek☆41May 22, 2024Updated last year
- ☆20May 7, 2024Updated last year
- ☆24Nov 14, 2025Updated 3 months ago
- Official repository of EnzymeFlow☆98Dec 7, 2024Updated last year
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated last year
- LoRA for protein language models☆47Jan 24, 2024Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆54Oct 8, 2025Updated 5 months ago
- ESMDynamic repo☆22Feb 25, 2026Updated last week
- ☆15Apr 3, 2025Updated 11 months ago
- ☆19Nov 28, 2025Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Plugin for folding sequences directly in PyMOL☆27Aug 5, 2025Updated 7 months ago
- Structure prediction of alternative protein conformations☆82Feb 24, 2025Updated last year
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Feb 3, 2026Updated last month
- Profluent-E1 family of Protein Encoder Models☆104Nov 21, 2025Updated 3 months ago
- The bioplib library☆12Jul 25, 2023Updated 2 years ago
- ☆17Aug 20, 2024Updated last year
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 7 months ago
- Benchmarking scripts for Gaia☆14Apr 10, 2025Updated 10 months ago
- ☆33Oct 14, 2024Updated last year
- GTalign, high-performance protein structure alignment, superposition and search☆55Aug 18, 2025Updated 6 months ago
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆63Aug 26, 2025Updated 6 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆23Feb 26, 2026Updated last week
- Public version for Distance-AF☆30Aug 17, 2025Updated 6 months ago