kiharalab / Domain-PFPLinks
Domain-PFP is a self-supervised method to predict protein functions from the domains
☆14Updated 2 years ago
Alternatives and similar repositories for Domain-PFP
Users that are interested in Domain-PFP are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated last year
- ☆37Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 5 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆22Updated 7 months ago
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆17Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Code for humanization of antibody and nanobody☆63Updated 2 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆46Updated last month
- ☆62Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆29Updated last year
- ☆71Updated 7 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 7 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- ☆29Updated 9 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆46Updated 2 weeks ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆77Updated 3 months ago
- ☆44Updated last year
- Baseline model for PPB-Affinity benchmark data☆31Updated 5 months ago
- ☆29Updated last month
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆47Updated last week
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆87Updated 5 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated last week
- ☆90Updated last month
- Efficient manipulation of protein structures in Python☆60Updated last month
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆26Updated last year
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆84Updated last month
- ☆30Updated last year