kiharalab / Domain-PFPLinks
Domain-PFP is a self-supervised method to predict protein functions from the domains
☆14Updated last year
Alternatives and similar repositories for Domain-PFP
Users that are interested in Domain-PFP are comparing it to the libraries listed below
Sorting:
- ☆39Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆40Updated 5 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆53Updated 4 months ago
- ☆61Updated last year
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month
- Code for humanization of antibody and nanobody☆53Updated last month
- ☆28Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆43Updated 9 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆22Updated 6 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆65Updated 2 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆34Updated last month
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆45Updated 10 months ago
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆77Updated last month
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆39Updated 4 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆40Updated 6 months ago
- ☆87Updated last month
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated last year
- Baseline model for PPB-Affinity benchmark data☆29Updated 4 months ago
- workflow used to prepare PPB-Affinity database☆27Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- ☆35Updated 5 months ago
- ☆22Updated 4 months ago
- MpbPPI: A multi-task pre-training-based equivariant approach for the prediction of the effect of amino acid mutations on protein-protein …☆16Updated 11 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆28Updated last year
- Modelling protein conformational landscape with Alphafold☆53Updated 3 weeks ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 8 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆118Updated 3 months ago
- Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2☆39Updated last year
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆12Updated 5 months ago