Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
☆23Aug 5, 2021Updated 4 years ago
Alternatives and similar repositories for alphafold2-multiprocessing
Users that are interested in alphafold2-multiprocessing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆15Apr 20, 2023Updated 2 years ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Multivariate Gaussian Direct Coupling Analysis for residue contact prediction in protein families - Julia module☆22Jan 27, 2022Updated 4 years ago
- The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.☆12Jun 13, 2017Updated 8 years ago
- The matching routine for interologs identification based on co-evolution☆11Jul 17, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A Gene Finder framework for Julia.☆16Jan 16, 2026Updated 2 months ago
- ☆10Mar 21, 2026Updated last week
- ☆12Jan 27, 2025Updated last year
- Wrapper to protein secondary structure calculation packages☆13Apr 3, 2025Updated 11 months ago
- Experiments in protein folding through language modeling☆10Dec 10, 2021Updated 4 years ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆31Mar 4, 2025Updated last year
- Library that handles atom structures as XYZ files and properties derived from it.☆18Aug 5, 2025Updated 7 months ago
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Feb 2, 2026Updated last month
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- pdbTool: An object-oriented Julia tool to parse PDB files and work with them☆16Jan 24, 2021Updated 5 years ago
- Graph-building for AtomicGraphNets☆12Nov 20, 2023Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36May 30, 2021Updated 4 years ago
- A flexible data structure for multi-input multi-output models☆10Oct 12, 2021Updated 4 years ago
- 3D-CNN based water position prediction method☆11Nov 20, 2023Updated 2 years ago
- ☆49Sep 25, 2024Updated last year
- Symmetric matrix as a list of the values in its upper or lower triangular part. Useful for representing pairwise measures or comparisons …☆20Sep 14, 2023Updated 2 years ago
- A protein 3D structure prediction application☆67May 5, 2021Updated 4 years ago
- chemical identifiers (CAS, PubChemID, SMILES,InChI, InChI keys, names) from text search☆21Nov 23, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Extract the PAE & pLDDT value of Alphafold2 from .pkl to .png, .csv & .pdb file.☆22Jan 2, 2022Updated 4 years ago
- ☆11Sep 17, 2024Updated last year
- ☆80Feb 26, 2024Updated 2 years ago
- ☆68Apr 28, 2025Updated 11 months ago
- ☆12Jun 16, 2023Updated 2 years ago
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- BioMetAll is a command line application to allow the identification of metal-binding sites in proteins from backbone preorganization.☆12May 10, 2024Updated last year
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- Utilities to programmatically query the PubChem database☆28Sep 9, 2025Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Official repository for the ProteinDJ protein design pipeline☆105Updated this week
- Improved ab initio protein structure reconstruction☆15Mar 7, 2018Updated 8 years ago
- ☆31Aug 16, 2021Updated 4 years ago
- ChainRules.jl integration for Unitful.jl☆13Aug 9, 2022Updated 3 years ago
- A framework for rapidly mining structural information from the Protein Data Bank☆53Jun 2, 2020Updated 5 years ago
- Run AlphaFold2 (and multimer) step by step☆39Apr 23, 2022Updated 3 years ago
- OpenSMILES parser in Julia☆26Oct 29, 2022Updated 3 years ago