wells-wood-research / alphafold2-multiprocessingLinks
Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
☆23Updated 4 years ago
Alternatives and similar repositories for alphafold2-multiprocessing
Users that are interested in alphafold2-multiprocessing are comparing it to the libraries listed below
Sorting:
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆26Updated last year
- Fast and accurate protein structure prediction☆56Updated 10 months ago
- ☆21Updated 2 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated 2 years ago
- ☆23Updated this week
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆30Updated 2 years ago
- Graph-based community clustering approach to extract protein domains from a predicted aligned error matrix☆35Updated 3 years ago
- Printing text using protein structures☆14Updated 4 years ago
- ML toolset for creating TED: The Encyclopedia of Domains☆24Updated 5 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆29Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆39Updated last year
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Python package to manage protein structures and their annotations☆44Updated last year
- Predict disorder and disorder binding from AlphaFold structures☆18Updated 11 months ago
- Web cards/apps describing peptides☆30Updated 2 years ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆58Updated 2 months ago
- We introduce a differentiable approach to phylogenetic tree construction, optimizing tree and ancestral sequences in its original represe…☆20Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆43Updated 2 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- ☆11Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆51Updated 6 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 2 months ago
- ☆31Updated last year
- Najmanovich Research Group Toolkit for Elastic Networks☆12Updated 2 years ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24Updated last year
- ☆29Updated 5 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year