Transformer for protein function prediction (version 2)
☆14Aug 31, 2026Updated 2 weeks ago
Alternatives and similar repositories for TransFew
Users that are interested in TransFew are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆17Mar 27, 2024Updated 2 years ago
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆19Aug 3, 2026Updated last month
- ☆22Sep 19, 2025Updated last year
- An official implementation of Protein Representation Learning via Knowledge Enhanced Primary Structure Reasoning☆28Jul 14, 2023Updated 3 years ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆64Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DomainMapper is a parser for hmmscan full output files built centrally around ECOD domain definitions. Users can optimize DomainMapper's …☆13Dec 13, 2023Updated 2 years ago
- Protein Annotation by Residue-Specific Enrichment: a site-based statistical method for interpretable protein function annotation☆16Jun 16, 2025Updated last year
- Differentiable Pairing using Alignment-based Language Models☆27Jan 5, 2024Updated 2 years ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated last year
- Transformer for protein function prediction☆34Oct 24, 2024Updated last year
- ☆22Mar 6, 2024Updated 2 years ago
- ☆53Sep 25, 2024Updated last year
- A Python script to map PDB ID + chain ID to UniProt ID.☆18Mar 7, 2024Updated 2 years ago
- queries for mimic-iv☆10Jul 2, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆18Feb 29, 2024Updated 2 years ago
- A Python Tool for Benchmarking Ontological Classification Methods☆54Jan 19, 2026Updated 8 months ago
- ☆13Jul 14, 2023Updated 3 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆29Feb 26, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- neuropeptide prediction☆15Sep 2, 2022Updated 4 years ago
- ☆40Sep 17, 2024Updated 2 years ago
- ☆13Feb 3, 2023Updated 3 years ago
- ☆15Sep 5, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 基于Qwen2.5模型、使用DISC-Law-SFT-Pair数据集微调的法律大模型☆11Dec 29, 2024Updated last year
- Representation learning for protein functional site analysis☆17Aug 11, 2023Updated 3 years ago
- 3D-CNN based water position prediction method☆11Nov 20, 2023Updated 2 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Aug 11, 2026Updated last month
- ☆17Oct 19, 2024Updated last year
- A simulation engine for compartmental models☆17Sep 4, 2026Updated 2 weeks ago
- ☆31Jan 16, 2024Updated 2 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated 2 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆36Nov 18, 2023Updated 2 years ago
- ☆15Jun 19, 2026Updated 3 months ago
- MEGADOCK on Google Colaboratory☆20Oct 2, 2023Updated 2 years ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 4 years ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 5 years ago
- ☆63Sep 11, 2024Updated 2 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Jun 26, 2022Updated 4 years ago