BioinfoMachineLearning / TransFewLinks
Transformer for protein function prediction (version 2)
☆14Updated 8 months ago
Alternatives and similar repositories for TransFew
Users that are interested in TransFew are comparing it to the libraries listed below
Sorting:
- MEGADOCK on Google Colaboratory☆17Updated last year
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025☆22Updated 3 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 2 months ago
- Structural space exploration of AlphaFold DB☆12Updated 3 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆27Updated 2 years ago
- Generates consistent PSSM and/or PDB files for protein-protein complexes☆20Updated 3 years ago
- Protein Origami via Genetic Fusions☆13Updated 2 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- KDS software for Kinase Drug Selectivity☆11Updated 2 years ago
- Deep learning based prediction of temperature dependent enzyme turnover rates☆14Updated 9 months ago
- Long disorder consensus predictor☆17Updated this week
- Geometry-aware protein binding site predictor☆21Updated last year
- Plugin for folding sequences directly in PyMOL☆27Updated last month
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆27Updated 6 months ago
- ☆23Updated 4 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- ESM-driven Pocket Cross Similarity☆13Updated 3 weeks ago
- ☆22Updated 2 years ago
- An improved method for predicting toxicity of the peptides and designing of non-toxic peptides☆15Updated 3 months ago
- Machine learning prediction of enzyme optimum pH☆44Updated 4 months ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated 11 months ago
- Pipeline for protein-protein interaction prediction☆23Updated 3 years ago
- ☆21Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆51Updated last month
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- ChatGPDB Service☆12Updated 2 years ago
- Repository of all EJP lab computational projects☆13Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated last week