Neighborhood Non-Negative Matrix Factorization
☆11Sep 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for NNMF
Users that are interested in NNMF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets☆11Oct 2, 2026Updated 2 weeks ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Dec 13, 2024Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 6 months ago
- ☆19Nov 24, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆12May 24, 2024Updated 2 years ago
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆60Jan 30, 2025Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆35Jul 13, 2024Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- A slimmed down version of scran, based on the C++ library of the same name.☆10Oct 15, 2024Updated 2 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 4 months ago
- Bioconductor-friendly bindings for Parquet files.☆11Jun 24, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Apr 15, 2025Updated last year
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated last year
- Codes used in LISTA project.☆14Apr 17, 2024Updated 2 years ago
- Spatial direct messaging detected by bivariate Moran☆34Jul 16, 2025Updated last year
- Spatial Cellular Estimator for Tumors☆66Sep 27, 2026Updated 3 weeks ago
- Geographic boundaries for NYC, including shapefiles and simplified geojson and topojson files with join fields. A reference repository fo…☆14Jan 18, 2022Updated 4 years ago
- ☆13Jul 26, 2026Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆61Aug 13, 2026Updated 2 months ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ExplaineR is an R package built for enhanced interpretation of classification and regression models based on SHAP method and interactive …☆21Aug 17, 2025Updated last year
- This repository provides the dataset HEMIT for H&E to mIHC image-to-image translation task☆27Dec 11, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆27Oct 25, 2023Updated 2 years ago
- ☆37Oct 4, 2024Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- ☆26Jul 9, 2025Updated last year
- ☆26Nov 25, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Helper functions for working with inForm data.☆25May 3, 2022Updated 4 years ago
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 4 months ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- ☆66Aug 6, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- BulkSignalR☆30Jun 23, 2026Updated 3 months ago
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆28Updated this week