TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems
☆20May 16, 2026Updated 2 months ago
Alternatives and similar repositories for TopicVelo
Users that are interested in TopicVelo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated last year
- ☆15Apr 11, 2024Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12May 24, 2024Updated 2 years ago
- scTM: A package for topic modelling in transcriptomics data☆26May 1, 2024Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 11 months ago
- ☆14May 3, 2026Updated 2 months ago
- Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in t…☆22Aug 19, 2022Updated 3 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- The forgotten garbage that transcends all causes and effects.☆11May 23, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆37Oct 22, 2025Updated 8 months ago
- Tools for assessing clustering robustness☆32Jul 14, 2026Updated last week
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆27Mar 7, 2024Updated 2 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136May 5, 2025Updated last year
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- ☆12Aug 31, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Nov 18, 2022Updated 3 years ago
- ☆27May 7, 2025Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆92Oct 9, 2024Updated last year
- ANS_signature_scoring: A gene expression signature scoring Python package.☆19Jan 18, 2026Updated 6 months ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- IPHOMED☆12Mar 30, 2026Updated 3 months ago
- ☆14Jan 24, 2024Updated 2 years ago
- CellPolaris☆14Jan 11, 2026Updated 6 months ago
- Code generated by Evelyn Fitzsimons (Regmefi)☆11Aug 30, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆23Dec 10, 2024Updated last year
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated 2 years ago
- Methods for decontamination of single cell data☆65Feb 16, 2025Updated last year
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆59Jan 30, 2025Updated last year
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆37Jun 12, 2020Updated 6 years ago
- Analysis of patch-seq data in pancreatic islets (ND, T2D and T1D)☆11May 9, 2020Updated 6 years ago
- Code repository for TCAT analyses☆15Sep 26, 2025Updated 9 months ago