Alternatives and similar repositories for TopicVelo

Users that are interested in TopicVelo are comparing it to the libraries listed below

• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆72Updated 2 years ago
• yutongo / TIGON
  ☆50Updated 8 months ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• xiaoyeye / TFvelo
  ☆46Updated last year
• welch-lab / VeloVAE
  Deep Generative Modeling of RNA Velocity
  ☆35Updated last month
• Roy-lab / scMTNI
  ☆30Updated 4 months ago
• YosefLab / velovi
  ☆40Updated last week
• SchubertLab / mvTCR
  ☆56Updated last year
• AllonKleinLab / cospar
  ☆26Updated last year
• bowang-lab / DeepVelo
  ☆46Updated last year
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆56Updated this week
• aristoteleo / dynamo-tutorials
  Tutorials on using latest dynamo package
  ☆24Updated 2 weeks ago
• qiaochen / VeloAE
  Low-dimensional Projection of Single Cell Velocity
  ☆28Updated 3 years ago
• nitzanlab / scPrisma
  scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…
  ☆18Updated last year
• yachimura-lab / scEGOT
  ☆16Updated 2 weeks ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆42Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆98Updated last month
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆33Updated last year
• zhanglhbioinfor / DIRECT-NET
  ☆12Updated 2 years ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• dpeerlab / ENVI
  ☆50Updated 2 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated last month
• zcang / SpaOTsc
  ☆45Updated 4 months ago
• rorymaizels / velvetVAE
  Variational Estimation of Latent Velocity from Expression with Time-resolution
  ☆13Updated last year
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆69Updated 2 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆67Updated last year
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆27Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆26Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year