☆20Sep 19, 2025Updated 11 months ago
Alternatives and similar repositories for SPACEc
Users that are interested in SPACEc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to transform images into valuable analysis items☆19Aug 19, 2026Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Automatically annotate cell types, consistently across samples.☆27Updated this week
- codes for article☆19Jan 14, 2026Updated 7 months ago
- ☆16Sep 29, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- A Snakemake pipeline for Xenium data analysis.☆28Jul 22, 2026Updated last month
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆76Nov 4, 2024Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆30Sep 6, 2024Updated last year
- ☆11Jul 8, 2024Updated 2 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆124Updated this week
- Python playground for cell-type-specific biology☆14Updated this week
- UniFORM: Towards Universal ImmunoFluorescence Normalization for Multiplex Tissue Imaging☆18Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆55Aug 11, 2025Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆45Jun 3, 2026Updated 2 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- ☆49Apr 8, 2025Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 8 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆28Dec 5, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Probabilistic cell segmentation for in situ spatial transcriptomics☆187Updated this week
- Notes by Markdown in HZAU Bioinformatics Courses☆15Dec 16, 2025Updated 8 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- ☆48Jun 1, 2026Updated 2 months ago
- ☆37Oct 10, 2025Updated 10 months ago
- Interactive and integrated analysis of multiplexed tissue microarrays☆15Updated this week
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆95Oct 9, 2024Updated last year
- Profile purification of single-cell spatial transcriptomics data☆54Jun 29, 2026Updated 2 months ago
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated last month
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆291Updated this week
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 6 months ago
- ☆68May 31, 2026Updated 2 months ago