tanlabcode / spatial-bonemarrow-atlas
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
☆73Updated 4 months ago
Alternatives and similar repositories for spatial-bonemarrow-atlas:
Users that are interested in spatial-bonemarrow-atlas are comparing it to the libraries listed below
- ☆98Updated 4 years ago
- ☆30Updated 11 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆45Updated 3 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 3 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆38Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆119Updated 6 months ago
- ☆44Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆94Updated last year
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆48Updated 2 months ago
- ☆102Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- ☆30Updated 2 years ago
- These are scripts for pan-cacner B cells analyses.☆47Updated 7 months ago
- These are scripts for pan-cacner NK cells analyses.☆67Updated last year
- Senescent Cell Identification☆31Updated 11 months ago
- ☆28Updated last year
- A package for reference mapping and nice visualization☆19Updated 9 months ago
- Construct Tumor Transition Zone Microenvironment☆40Updated 3 months ago
- Codes for the scPLC project☆60Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆119Updated 3 weeks ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 9 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 3 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆93Updated 5 months ago
- scripts associated with NAFLD-NASH project☆20Updated 8 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆111Updated 4 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Reanalyze of GSE111527 scRNA-seq data☆18Updated 4 years ago
- Quantifying metabolism activity at the single-cell resolution☆127Updated 6 months ago