This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
☆96Oct 9, 2024Updated 2 years ago
Alternatives and similar repositories for spatial-bonemarrow-atlas
Users that are interested in spatial-bonemarrow-atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Mar 6, 2024Updated 2 years ago
- ☆33Feb 26, 2025Updated last year
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆20Aug 24, 2023Updated 3 years ago
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- Code for the spatial transcriptomic paper on IPF lungs☆24Jul 18, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- TLS in HNSCC☆22Apr 5, 2026Updated 6 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆36Jul 13, 2024Updated 2 years ago
- codes for article☆18Jan 14, 2026Updated 9 months ago
- ☆18Dec 18, 2023Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆60Jan 6, 2025Updated last year
- ☆40Jun 24, 2025Updated last year
- ☆14Jun 11, 2023Updated 3 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Apr 11, 2024Updated 2 years ago
- ☆60Feb 23, 2024Updated 2 years ago
- Assembly and Annotation of the Human Immune Health Atlas☆29Aug 28, 2025Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆140Sep 6, 2024Updated 2 years ago
- ☆41Mar 5, 2024Updated 2 years ago
- These are scripts for pan-cacner B cells analyses.☆61Jul 22, 2024Updated 2 years ago
- ☆13Mar 5, 2024Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆29Jun 19, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code used to process the data of the HBCA project☆36Feb 9, 2024Updated 2 years ago
- R code used to analyze single cell PDAC data☆43Jun 29, 2024Updated 2 years ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- ☆15Mar 17, 2026Updated 7 months ago
- These are scripts for pan-cacner NK cells analyses.☆76Aug 18, 2023Updated 3 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆76Dec 13, 2024Updated last year
- Codes used in LISTA project.☆14Apr 17, 2024Updated 2 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆270Jul 8, 2026Updated 3 months ago
- Integration of gut cell atlases☆42May 6, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Codes for the scPLC project☆73Dec 2, 2022Updated 3 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- ☆12May 24, 2024Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- ☆12Aug 2, 2020Updated 6 years ago
- ☆46Jul 14, 2023Updated 3 years ago