This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
☆92Oct 9, 2024Updated last year
Alternatives and similar repositories for spatial-bonemarrow-atlas
Users that are interested in spatial-bonemarrow-atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Feb 26, 2025Updated last year
- scripts associated with NAFLD-NASH project☆31May 23, 2024Updated 2 years ago
- ☆17Mar 6, 2024Updated 2 years ago
- These are code and scripts for MVI+ HCC scRNA-seq analysis.☆19Aug 24, 2023Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- scRNA-seq analysis of EENT-ONB☆22Jan 14, 2024Updated 2 years ago
- ☆17Dec 18, 2023Updated 2 years ago
- codes for article☆19Jan 14, 2026Updated 6 months ago
- Code for the spatial transcriptomic paper on IPF lungs☆23Jul 18, 2024Updated 2 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆66Dec 7, 2022Updated 3 years ago
- ☆15Apr 11, 2024Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- ☆40Mar 5, 2024Updated 2 years ago
- ☆12Mar 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆40Jun 24, 2025Updated last year
- R code used to analyze single cell PDAC data☆42Jun 29, 2024Updated 2 years ago
- ☆59Feb 23, 2024Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆31Jun 19, 2024Updated 2 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- TLS in HNSCC☆17Apr 5, 2026Updated 3 months ago
- Codes for the scPLC project☆73Dec 2, 2022Updated 3 years ago
- These are scripts for pan-cacner B cells analyses.☆60Jul 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆80Oct 29, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆136Sep 6, 2024Updated last year
- Code used to process the data of the HBCA project☆33Feb 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- These are scripts for pan-cacner NK cells analyses.☆77Aug 18, 2023Updated 2 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆75Nov 4, 2024Updated last year
- Scissor package☆270May 10, 2024Updated 2 years ago
- ☆17Mar 27, 2023Updated 3 years ago
- Analysis pipeline used to benchmark scRNA-seq copy number variant callers☆16May 17, 2026Updated 2 months ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Jul 12, 2026Updated last week