Alternatives and similar repositories for spatial-bonemarrow-atlas

Users that are interested in spatial-bonemarrow-atlas are comparing it to the libraries listed below

• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆130Updated last month
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆79Updated 10 months ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 4 years ago
• Sijin-ZhangLab / PanMyeloid
  ☆106Updated 4 years ago
• hedyBao / HNSCC_scRNA
  ☆37Updated last year
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆53Updated last year
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆47Updated last year
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• yqq-chen / CRC_ICB
  ☆32Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆108Updated 4 months ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆60Updated 8 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆95Updated 4 years ago
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆69Updated 2 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆123Updated 11 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆164Updated 5 months ago
• aliceygao / pan-Fibroblast
  ☆47Updated last year
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆68Updated 2 years ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 5 months ago
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆134Updated 3 years ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆118Updated 11 months ago
• wagnerlab-berkeley / Compass
  ☆29Updated 5 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆42Updated last year
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆78Updated last month
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆83Updated last year
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆150Updated 4 years ago
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆138Updated 2 months ago