tanlabcode / spatial-bonemarrow-atlasLinks
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
☆82Updated 7 months ago
Alternatives and similar repositories for spatial-bonemarrow-atlas
Users that are interested in spatial-bonemarrow-atlas are comparing it to the libraries listed below
Sorting:
- ☆34Updated last year
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆45Updated last year
- ☆104Updated 4 years ago
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 10 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 7 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆49Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆148Updated 2 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆112Updated 9 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆56Updated 5 months ago
- ☆108Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆105Updated 2 months ago
- Quantifying metabolism activity at the single-cell resolution☆135Updated 9 months ago
- ☆45Updated 3 years ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆113Updated 8 months ago
- collected resource for scRNA-seq analysis☆59Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆57Updated last year
- Construct Tumor Transition Zone Microenvironment☆42Updated 6 months ago
- These are scripts for pan-cacner B cells analyses.☆50Updated 10 months ago
- These are scripts for pan-cacner NK cells analyses.☆68Updated last year
- Create stacked violin plot☆49Updated 3 years ago
- A package for reference mapping and nice visualization☆20Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆74Updated 6 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- ☆67Updated 2 years ago
- Codes used in pan-T cell analysis☆59Updated 2 years ago
- Reanalyze of GSE111527 scRNA-seq data☆20Updated 5 years ago
- Codes for the scPLC project☆65Updated 2 years ago