Alternatives and similar repositories for BioMapAI

Users that are interested in BioMapAI are comparing it to the libraries listed below

• linnarsson-lab / adult-human-brain
  Cytograph version used for adult human-brain analysis
  ☆94Updated 2 weeks ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆99Updated this week
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆35Updated 11 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆184Updated last month
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆27Updated last year
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆28Updated last month
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆58Updated 8 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆69Updated 2 months ago
• miargentieri / proteomic-age-ukb
  ☆51Updated 6 months ago
• PansccSpat / SpatialMapESCC
  ☆24Updated last year
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆63Updated 3 years ago
• lamanno-epfl / velocycle
  Bayesian model for RNA velocity estimation of periodic manifolds
  ☆34Updated last year
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 8 months ago
• LungCellAtlas / HLCA
  ☆66Updated 2 years ago
• xleizi / easySCF
  ☆48Updated 3 months ago
• schwartzlab-methods / CellNEST
  Implementation of CellNEST method
  ☆59Updated 2 months ago
• shuxiaoc / maxfuse
  ☆59Updated 3 weeks ago
• alberto-valdeolivas / ST_CRC_CMS
  This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…
  ☆11Updated 2 years ago
• sunericd / spatial_aging_clocks
  Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life
  ☆47Updated 9 months ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆43Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated this week
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆84Updated 10 months ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆14Updated 4 years ago
• naomihabiblab / BEYOND_DLPFC
  Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease
  ☆64Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆43Updated 8 months ago
• YDaiLab / scRegulate
  Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data
  ☆32Updated last month
• wanglab-broad / mCNS-atlas
  ☆19Updated last year
• SpielmannLab / STIGMA
  ☆10Updated last month
• BCH-RC / scDown
  ☆39Updated 4 months ago