Alternatives and similar repositories for BioMapAI

Users that are interested in BioMapAI are comparing it to the libraries listed below

• alberto-valdeolivas / ST_CRC_CMS
  This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…
  ☆11Updated 2 years ago
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆64Updated 3 years ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆58Updated 7 months ago
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆39Updated last month
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆176Updated 3 weeks ago
• linnarsson-lab / adult-human-brain
  Cytograph version used for adult human-brain analysis
  ☆92Updated 6 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆83Updated 9 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆98Updated 2 months ago
• ncbi-nlp / GeneAgent
  The code for gene set analysis by accessing domain databases
  ☆93Updated 2 weeks ago
• sunericd / spatial_aging_clocks
  Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life
  ☆46Updated 9 months ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆33Updated 11 months ago
• PansccSpat / SpatialMapESCC
  ☆24Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Updated 2 years ago
• hamiltonoh / organage
  A package to estimate biological organ age using SomaScan plasma proteomics data
  ☆64Updated last year
• ggit12 / anndictionary
  Conveniently process a dictionary of anndatas
  ☆21Updated 4 months ago
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆22Updated 3 years ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆128Updated 7 months ago
• shuxiaoc / maxfuse
  ☆57Updated last year
• xleizi / easySCF
  ☆48Updated 2 months ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 4 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆32Updated 2 months ago
• ati-lz / ISCHIA
  Framework for analysis of cell-types and Ligand-Receptor cooccurrences
  ☆18Updated 2 years ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆67Updated 2 months ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆80Updated 8 months ago
• shenglinmei / ProstateCancerAnalysis
  ☆20Updated 10 months ago
• bowang-lab / scGPT-spatial
  ☆121Updated 10 months ago
• wanglab-broad / mCNS-atlas
  ☆19Updated last year
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆28Updated 2 weeks ago