Alternatives and similar repositories for BioMapAI

Users that are interested in BioMapAI are comparing it to the libraries listed below

• alberto-valdeolivas / ST_CRC_CMS
  This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…
  ☆11Updated 2 years ago
• sunericd / spatial_aging_clocks
  Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life
  ☆44Updated 6 months ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 3 years ago
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆61Updated 2 years ago
• SBIlab / NetBio
  ☆34Updated 3 years ago
• kannyjyk / UKB-MDRMF
  ☆20Updated last month
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• NCICCGPO / gdan-tmp-models
  Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.
  ☆27Updated 6 months ago
• linnarsson-lab / adult-human-brain
  Cytograph version used for adult human-brain analysis
  ☆89Updated 4 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆25Updated 7 months ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• shenglinmei / ProstateCancerAnalysis
  ☆20Updated 7 months ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆31Updated 8 months ago
• LungCellAtlas / HLCA
  ☆63Updated 2 years ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆37Updated 4 months ago
• huang-sh / scmcp
  MCP server for single cell analysis
  ☆12Updated 5 months ago
• rnacentre / BrainCellAtlas-reproducibility
  This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.
  ☆18Updated last year
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆78Updated 5 months ago
• shuxiaoc / maxfuse
  ☆56Updated last year
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆121Updated 4 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 4 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 8 months ago
• Svvord / iMAP
  A novel unsupervised batch removal framework, called iMAP, based on neural networks.
  ☆35Updated 3 years ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated last year
• miargentieri / proteomic-age-ukb
  ☆48Updated 2 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆56Updated 2 years ago
• ati-lz / ISCHIA
  Framework for analysis of cell-types and Ligand-Receptor cooccurrences
  ☆17Updated 2 years ago
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆54Updated last year
• jaleesr / SenePy
  SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…
  ☆44Updated 8 months ago