metagenomics / 2015-biogas-cebitecLinks
Bremges et al. (2015). GigaScience, 4:33.
☆12Updated last year
Alternatives and similar repositories for 2015-biogas-cebitec
Users that are interested in 2015-biogas-cebitec are comparing it to the libraries listed below
Sorting:
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Updated 6 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- ☆13Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- ☆36Updated 7 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- ☆24Updated 5 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated 2 weeks ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- ☆29Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Reduced Alphabet based Protein similarity Search☆40Updated 5 years ago