metagenomics / 2015-biogas-cebitecLinks
Bremges et al. (2015). GigaScience, 4:33.
☆12Updated last year
Alternatives and similar repositories for 2015-biogas-cebitec
Users that are interested in 2015-biogas-cebitec are comparing it to the libraries listed below
Sorting:
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆36Updated 2 years ago
- ☆14Updated 6 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆20Updated last month
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ☆23Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Updated 5 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 9 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 6 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆74Updated last week
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A very simple BLAST filtering pipeline☆18Updated 11 years ago
- Bioinformatics Pipeline and Visualization resources☆56Updated 9 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- ☆15Updated 2 months ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆28Updated 5 months ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆31Updated last month
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- ☆36Updated 2 months ago