metagenomics / 2015-biogas-cebitecLinks
Bremges et al. (2015). GigaScience, 4:33.
☆12Updated 2 years ago
Alternatives and similar repositories for 2015-biogas-cebitec
Users that are interested in 2015-biogas-cebitec are comparing it to the libraries listed below
Sorting:
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Updated 6 years ago
- ☆24Updated 5 years ago
- Reduced Alphabet based Protein similarity Search☆40Updated 5 years ago
- ☆13Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated 2 weeks ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆77Updated last month
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- http://www.combio.pl/alfree☆23Updated 3 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Updated 2 months ago
- ☆29Updated last year
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆51Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.☆17Updated 3 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Updated 10 years ago