mcapuccini / TheSparkBoxLinks
TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.
☆12Updated 7 years ago
Alternatives and similar repositories for TheSparkBox
Users that are interested in TheSparkBox are comparing it to the libraries listed below
Sorting:
- MaRe leverages the power of Docker and Spark to run and scale your serial tools in MapReduce fashion.☆14Updated 3 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- ☆15Updated 7 months ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 10 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Updated 9 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆69Updated 3 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information☆33Updated 8 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Updated 6 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- The SnoVault general purpose hybrid object-relational database☆16Updated last year
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 7 years ago
- Parallel Genomic Analysis Toolkit☆14Updated 6 years ago
- ☆12Updated 8 years ago
- Quality control methods for human genomic variants.☆62Updated 3 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Updated 9 years ago
- Spark VCF data source implementation for Dataframes☆14Updated 3 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Updated 9 months ago
- BigDataScript: Scirpting language for big data☆92Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- workflow and resource management system for bioinformatics data analysis☆69Updated 5 years ago
- ☆92Updated last month
- [Bio in Docker] Symposium 2015☆21Updated 8 years ago
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- Bremges et al. (2015). GigaScience, 4:33.☆12Updated last year
- APIs for discovering genomics tools, their metadata and their containers☆32Updated 2 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago