Alternatives and similar repositories for NEMO

Users that are interested in NEMO are comparing it to the libraries listed below

• xzhoulab / DRComparison
  Comparison of dimensionality reduction methods
  ☆30Updated 5 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆26Updated last year
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆22Updated 3 years ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆23Updated 4 years ago
• SchulzLab / EpigenomicsTutorial-ISMB2017
  Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
  ☆14Updated 4 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆14Updated 3 weeks ago
• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• waldronlab / curatedTCGAData
  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
  ☆44Updated last month
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆13Updated last month
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 6 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 6 years ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 3 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆34Updated last year
• rnabioco / cellar
  scRNA-Seq analysis vignettes
  ☆9Updated 3 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• cancerdatasci / demeter
  Deconvolution of seed effects from gene effects in large scale RNAi screens
  ☆10Updated 7 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• ELELAB / MoonlightR
  ☆17Updated last year
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆18Updated last month
• fperraudeau / bioc2017singlecell
  Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…
  ☆11Updated 7 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 3 years ago
• MarioniLab / ImmuneAging2017
  Code for Celia and Nils' immune aging project.
  ☆9Updated 5 years ago
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 4 years ago