Alternatives and similar repositories for smash

Users that are interested in smash are comparing it to the libraries listed below

• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 6 years ago
• AlexanderDilthey / MHC-PRG
  Population Reference Graphs for the HLA and MHC.
  ☆35Updated 6 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆89Updated 6 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• wtsi-npg / illumina2bam
  Generate and process BAM files from Illumina sequencing instrument files
  ☆23Updated 9 years ago
• arq5x / piledriver
  Basic, no assumptions, multi-pileup
  ☆24Updated 11 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆22Updated 4 years ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• bioinformed / vgraph
  vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…
  ☆43Updated 4 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 12 years ago
• alimanfoo / vcfnp
  Load numpy arrays and HDF5 files from VCF (variant call format)
  ☆31Updated 8 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 5 months ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 8 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 8 years ago
• bcgsc / orca
  Genomics Research Container Architecture
  ☆48Updated 6 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 7 years ago
• DaehwanKimLab / hisat
  Fast spliced aligner with low memory requirements
  ☆41Updated 10 years ago