Benchmarking toolkit for variant calling
☆48Oct 13, 2020Updated 5 years ago
Alternatives and similar repositories for smash
Users that are interested in smash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HGVS variant description extractor☆11Apr 13, 2026Updated 3 weeks ago
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Beacon of Beacons.☆14Sep 25, 2018Updated 7 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- Fast and memory-efficient sequencing error corrector☆94Jan 4, 2026Updated 4 months ago
- Visualizing genetic sequence variation☆14Apr 27, 2020Updated 6 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository…☆51Jun 1, 2018Updated 7 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads☆15Apr 30, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Nov 2, 2015Updated 10 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- ☆15Apr 2, 2025Updated last year
- Smart VCF parser DSL☆83May 24, 2022Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- Algorithms that work on generic C arrays☆11Feb 13, 2017Updated 9 years ago
- A Variant Caller, Distributed. Apache 2 licensed.☆71Mar 11, 2019Updated 7 years ago
- CureFFI.org☆16Apr 23, 2026Updated last week
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆93Oct 3, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 5 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆14Oct 26, 2017Updated 8 years ago
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- ☆12Dec 1, 2021Updated 4 years ago
- Crawlista is a support library for Clojure applications that crawl the Web☆68Jan 2, 2016Updated 10 years ago
- The original version of MGA has been archived - please see https://github.com/crukci-bioinformatics/mga2 instead.☆25Apr 15, 2021Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆100Apr 19, 2026Updated 2 weeks ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago