amplab / smash
Benchmarking toolkit for variant calling
☆47Updated 4 years ago
Alternatives and similar repositories for smash:
Users that are interested in smash are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- a string to graph aligner☆41Updated 8 years ago
- Basic, no assumptions, multi-pileup☆24Updated 10 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆32Updated 5 years ago
- Convert genetic variants to minimal representation☆23Updated 7 years ago
- The gkno launcher for executing tools or pipelines☆32Updated 8 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Predict the functional consequences of both coding and non-coding single nucleotide variants (SNVs)☆19Updated 3 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- ☆37Updated 4 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 7 years ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆38Updated last week
- What's The Function of these genes?☆22Updated 7 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆42Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆34Updated 2 years ago