tgen / CovGen
Creates a target specific exome_full192.coverage.txt file required by MutSig
☆21Updated 3 years ago
Alternatives and similar repositories for CovGen
Users that are interested in CovGen are comparing it to the libraries listed below
Sorting:
- Differential ATAC-seq toolkit☆27Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- WES HLA Typing based on multiple alternative tools☆16Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 4 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 7 months ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…