tgen / CovGenLinks
Creates a target specific exome_full192.coverage.txt file required by MutSig
☆21Updated 4 years ago
Alternatives and similar repositories for CovGen
Users that are interested in CovGen are comparing it to the libraries listed below
Sorting:
- Differential ATAC-seq toolkit☆27Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 8 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- DriverPower☆26Updated 10 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- A rust framework to make using alevin-fry even simpler☆60Updated 7 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Universal RObust Peak Annotator☆16Updated last year
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆23Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 5 months ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago
- ☆35Updated 5 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago