tgen / CovGen
Creates a target specific exome_full192.coverage.txt file required by MutSig
☆21Updated 3 years ago
Alternatives and similar repositories for CovGen:
Users that are interested in CovGen are comparing it to the libraries listed below
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last week
- Differential ATAC-seq toolkit☆27Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- ☆8Updated 6 years ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated last month
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 7 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- DriverPower☆26Updated 2 months ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- ☆38Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 4 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- ☆22Updated last month
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- DNA copy number detection from off-target sequence data☆31Updated 6 years ago
- ☆40Updated 6 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆17Updated 3 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago