tgen / CovGen
Creates a target specific exome_full192.coverage.txt file required by MutSig
☆21Updated 3 years ago
Alternatives and similar repositories for CovGen:
Users that are interested in CovGen are comparing it to the libraries listed below
- An R package for predicting HR deficiency from mutation contexts☆28Updated last week
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- DriverPower☆26Updated last month
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- ☆21Updated 2 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 10 months ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 5 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆24Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- DNA copy number detection from off-target sequence data☆30Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers