ga4gh / task-execution-serverLinks
☆11Updated 8 years ago
Alternatives and similar repositories for task-execution-server
Users that are interested in task-execution-server are comparing it to the libraries listed below
Sorting:
- Convert CWL to WDL☆17Updated 8 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- APIs for discovering genomics tools, their metadata and their containers☆31Updated 7 months ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- cache packages permanently☆14Updated 11 months ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 4 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆36Updated last week
- reference free variant assembly☆33Updated last year
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- a wee tool for random access into BGZF files.☆84Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- H3ABioNet 16S rDNA diverstity analysis package☆18Updated 6 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- succinct labeled graphs with collections and paths☆15Updated 6 years ago
- A lightweight Python graphing API for genomic features☆15Updated 2 years ago