centre-pathogen-genomics / snippy-ngLinks
☆20Updated 3 weeks ago
Alternatives and similar repositories for snippy-ng
Users that are interested in snippy-ng are comparing it to the libraries listed below
Sorting:
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- Genome size estimation from long read overlaps☆57Updated 2 months ago
- µbinfie blog☆17Updated 3 months ago
- ☆10Updated 2 weeks ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆16Updated last week
- Plasmid analysis using rearrangement distances☆42Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- ☆16Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- Visualize microbial evolution at the SNP level!☆14Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 3 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- snakemake-powered cli to download genomes using NCBI datasets☆14Updated 5 months ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- ☆23Updated 4 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 11 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆73Updated last month
- REcombination BARcode detector.☆15Updated last year
- Calculate assocations between genes and traits☆23Updated 3 months ago
- Assembly based core SNP alignments☆7Updated 2 years ago
- 🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit☆10Updated 3 weeks ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Organism-specific interpretation of AMR genotypes☆13Updated last year
- Microbial agile accurate SNP Typer☆29Updated last year