Alternatives and similar repositories for pciSeq:

Users that are interested in pciSeq are comparing it to the libraries listed below

• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆27Updated 6 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆53Updated 2 weeks ago
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆30Updated 11 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆35Updated 4 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆21Updated 8 months ago
• HiDiHlabs / ssam
  ☆28Updated 6 months ago
• scverse / spatialdata-io
  ☆57Updated last week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆77Updated last week
• ElementoLab / utag
  ☆34Updated last year
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆26Updated last month
• linnarsson-lab / FISHscale
  Spatial analysis of FISH data
  ☆29Updated 10 months ago
• wanglab-broad / CAST
  CAST package
  ☆33Updated 5 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆25Updated this week
• spacetx-spacejam / data
  data for spacejam2
  ☆17Updated 2 years ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆91Updated 2 weeks ago
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆16Updated last year
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆14Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 6 months ago
• wollmanlab / JSTA
  ☆14Updated 3 years ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆77Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆25Updated 8 months ago
• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆14Updated last month
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆17Updated this week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 2 months ago
• wanglab-broad / ClusterMap
  ClusterMap for multi-scale clustering analysis of spatial gene expression
  ☆45Updated 8 months ago
• damienArnol / svca
  ☆13Updated 6 years ago
• prabhakarlab / Banksy_py
  ☆45Updated 4 months ago
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆20Updated 2 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 10 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last month