acycliq / pciSeqLinks
A probabilistic cell typing algorithm for spatial transcriptomics.
☆25Updated last week
Alternatives and similar repositories for pciSeq
Users that are interested in pciSeq are comparing it to the libraries listed below
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- ☆39Updated last year
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- CAST package☆40Updated 11 months ago
- ☆27Updated 11 months ago
- ☆59Updated this week
- ☆72Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week
- ☆29Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated last month
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Spatial analysis of FISH data☆31Updated 4 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆85Updated last week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆17Updated 3 months ago
- ☆37Updated 2 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 4 months ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆76Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆54Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- comseg