chenlingantelope / MSscRNAseq2019
Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al
☆22Updated 3 years ago
Alternatives and similar repositories for MSscRNAseq2019:
Users that are interested in MSscRNAseq2019 are comparing it to the libraries listed below
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- ☆12Updated 9 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 3 months ago
- R package for Bioconductor submission☆33Updated 2 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆21Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆20Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- Scalable Tool for Gene Network Reverse Engineering☆23Updated 8 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 3 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆40Updated this week
- ☆25Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago