chenlingantelope / MSscRNAseq2019
Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al
☆21Updated 3 years ago
Related projects: ⓘ
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 4 years ago
- Fast motif matching in R☆41Updated 7 months ago
- R package for Bioconductor submission☆30Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆14Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆38Updated 3 months ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆26Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆25Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆29Updated 6 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Scalable Tool for Gene Network Reverse Engineering☆22Updated 3 months ago
- MASC: Mixed-effects Association testing for Single Cells☆15Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆27Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆23Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 2 months ago
- Access and Format Single-cell RNA-seq Datasets from Public Resources☆29Updated 4 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆42Updated last year
- ☆21Updated 2 years ago
- ☆19Updated 2 months ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆21Updated 2 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated 10 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago