Archetypal Analysis network (AAnet)
☆41Jan 30, 2025Updated last year
Alternatives and similar repositories for AAnet
Users that are interested in AAnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scikit-learn compatible package for archetypal analysis.☆28Mar 18, 2026Updated last month
- Single-cell archetypal analysis neural network☆16May 27, 2022Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆44Aug 28, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- generalized principal component analysis (GLM-PCA) implemented in python☆63Feb 1, 2021Updated 5 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆33Jul 27, 2020Updated 5 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated last month
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- ☆13Sep 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆25Apr 22, 2026Updated last week
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- ☆30Oct 7, 2022Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 9 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Jul 5, 2019Updated 6 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- ☆12Jul 6, 2023Updated 2 years ago
- Code for the paper on t-SNE with variable degree of freedom☆25Aug 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- supporting code for the multinomial single cell RNA-Seq paper☆53Jan 6, 2021Updated 5 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Contrastive Poisson latent variable models (CPLVMs)☆11Feb 7, 2022Updated 4 years ago
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated last year
- Analyses in R and Python Using curatedMetagenomicData☆38Nov 16, 2025Updated 5 months ago
- Painting Tools and Dataset☆34Jun 12, 2025Updated 10 months ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- Single Cell Analysis course at Cold Spring Harbor Laboratory 2017☆23Oct 19, 2017Updated 8 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆100Jan 27, 2021Updated 5 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆35Apr 1, 2025Updated last year
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated last month
- ☆18Dec 22, 2017Updated 8 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆24Feb 24, 2025Updated last year
- Information Constraints on Auto-Encoding Variational Bayes☆11May 24, 2018Updated 7 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago