Archetypal Analysis network (AAnet)
☆41Jan 30, 2025Updated last year
Alternatives and similar repositories for AAnet
Users that are interested in AAnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TensorFlow-Implementation of Deep Archetypal Analysis☆12Aug 4, 2021Updated 5 years ago
- Scikit-learn compatible package for archetypal analysis.☆32Jun 16, 2026Updated 4 months ago
- ☆11Jan 7, 2020Updated 6 years ago
- Single-cell archetypal analysis neural network☆15May 27, 2022Updated 4 years ago
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆13Oct 1, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆31Oct 7, 2022Updated 4 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 5 years ago
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆47Aug 28, 2025Updated last year
- End-to-end pipeline for segmenting cell nuclei on histology slides☆16Jul 19, 2022Updated 4 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆65Feb 1, 2021Updated 5 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Jul 27, 2020Updated 6 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Version 2.1.0 released☆23Sep 16, 2019Updated 7 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆44Mar 2, 2025Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆24Apr 19, 2021Updated 5 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 8 years ago
- reverse gene expression score☆17Sep 8, 2023Updated 3 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 3 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- ☆11Apr 26, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Consistent Clusters for scRNA-seq☆12Oct 6, 2021Updated 5 years ago
- Repository to support the reproducibility of the results contained in Vaquero et al. manuscript published in eLife☆11Jan 9, 2016Updated 10 years ago
- ☆12Jul 6, 2023Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated 2 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 7 months ago
- ☆48Jun 21, 2019Updated 7 years ago
- Adaptive resampling for machine learning in single-cell biology☆14Sep 30, 2026Updated last month
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆200Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆13Sep 30, 2024Updated 2 years ago
- ☆11Jun 29, 2021Updated 5 years ago
- The Union of Intersections Framework in Python☆15Oct 7, 2026Updated 3 weeks ago
- ☆16Apr 29, 2024Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆18Jul 5, 2019Updated 7 years ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago